Gene detail

Gene detail information of Glyur000035s00004977

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22260.1	2.00E-128	Alternative oxidase family protein
NR	XP_003594164.1	0	Alternative oxidase [Medicago truncatula]
Swissprot	tr\|Q56X52\|AOX4_ARATH	1.00E-168	Ubiquinol oxidase 4, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|Q2HTI6\|Q2HTI6_MEDTR	0	Ubiquinol oxidase {ECO:0000256\|RuleBase:RU003779}

Sequence

Transcript Sequence

>Glyur000035s00004977.1
CGTGTACCTATGAGCATTCNGCTTACGTCTGGCGCAAATATCTATTTTTTTTTCCCTTAAAAAAAATCTAGTACCGTACCGGACCCTAACACAAAGCACATGCCGAAGCGGANCGGCCGAGAATAGTCGCCGGAATTGCCGTAAATGCCGACTATGACAAAACCCGCGAAACGACAAACATCGTGGAGACACCACTAACGTTGTCTCTGCCGTTTCCATTTCTTCAATTCCACTAATATCACCCGAGNCTGAGACACTGAGCTCCATCTCCAACAGAGTTAGCAAAGATGGCGGCGATTTTCTCTTCTTCGGTCTTNGCAACCACACCTCTTAAGAAGAAATCACTGTCCTCACACCACTCTCAAATCCAGCTTCATCATCATAATAGTCCCCTTTCACGTCGCCCACCACTTTCCAGGATTCGGGCGTCTCTACTACAAGATAAAGAGGAAAAGGTGATTGTACAAGACTCATTCCCCTCCAAGACCTCTCCTTTAGATACCGATAGTGGGAACTCAATTAATACTTCATCTTCATCCCCCACCAGTGCGTGGGAGAAAGGGGTTATCAAGTTTGAACAATCAGTCAATGTCTTTCTCACGGATACCGTGATAACGATACTTGATGCTTTGTACCGTGATAGAAATTATGCAAGGTTTTTTGTGCTTGAAACNATTGCAAGGGTTCCTTACTTTGGCTTTATATCAGTTCTCCACATGTATGAGAGTTTTGGCTGGTGGAGGCGAGCGGACTATCTGAAAGTGCATTTTGCTGAGAGCTGGAATGAAATGCATCATTTGCTCATCATGGAAGAACTTGGAGGGAATGCTTGGTGGTTTGACCGGTTTCTTGCTCAACATATTGCAATATTTTATTATATTATGACAGTTTTAATGTATGCGATAAGCCCAAGAATGGCATATCACTTATCTGAATGCGTAGAGAGTCATGCATTTGAGACTTATGACAAATTTATCAAAGACCAAGGAGAGGAATTGAAAAAAATGCCGGCTCCTGAGGTTGCTGTGAATTATTATACAGGTGGTGACTTGTATTTATTTGATGAATTTCAAACTTCCAGAGTTCCAAATTCTAGAAGGCCTAAGATAGAGAATCTGTACGATGTATTTGTGAACATAAGAGATGACGAAGCTGAACATTGTAAGACAATGAAGGCTTGTCAAACACATGGGAACCTCCGGTCACCTCATTCATATGCAGAGGAGGAGGANGATGGCTCAGTCTGTACTCTTGAAGCAGCAGATTGTGAAGGAATAGTAGACTGTATAAAGAAATCTGTGACTTCTGATCCAGCTAAGGCGAAGTAAAGATATANGGGGCACAATACATAATGCATTCATTCAAAACAGAAATAATAAAAAAGGATACGAGGTAGTGAATAATGATTAGAGCTAGTACANACATATAGTTGAAATTTGGATAAGATTCCTCTAAAAGTGAGGGAGTGAGANCATATTTTTTCAAAAAAAACATATTGGACCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	203307	207271	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0009916 alternative oxidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00004977.1	PF01786.12	AOX	86	303	1.00E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.023
SRR1783600	control	15.038
SRR1783602	moderate drought stress	18.705
SRR1811619	moderate drought stress	18.673

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.747
DRR006520	Root Summer glycyrrhizin high producing strain	12.679
DRR006521	Root Winter glycyrrhizin high producing strain	51.453
DRR006522	Root Winter glycyrrhizin high producing strain	50.158
DRR006523	Root Summer glycyrrhizin low producing strain	35.043
DRR006524	Root Summer glycyrrhizin low producing strain	34.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	97.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	97.083

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.220
SRR2868004	Drought Stress (root)	30.104
SRR2967015	Control (root)	30.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.395
SRR9715740	Leaf	37.668
SRR9715741	Leaf	20.519
SRR9715739	Root	1.533
SRR9715742	Root	4.764
SRR9715743	Root	4.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	192.373
SRR8749028	MeJA induced 9h	197.990
SRR8749029	MeJA induced 9h	289.526
SRR8749030	Uninduced	183.416
SRR8749031	Uninduced	80.563
SRR8749032	Uninduced	89.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.791
SRR8400027	Control - Root	23.017