Gene detail information of Glyur000035s00004973 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03965.1 | 6.00E-46 | RING/U-box superfamily protein |
| NR | ABD32654.1 | 2.29E-98 | Zinc finger, RING-type [Medicago truncatula] |
| Swissprot | tr|Q8LA32|LUL4_ARATH | 5.00E-07 | Probable E3 ubiquitin-protein ligase LUL4 |
| trEMBL | tr|Q2HTH7|Q2HTH7_MEDTR | 9.00E-99 | Zinc finger, RING-type {ECO:0000313|EMBL:ABD32654.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 158434 | 159093 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00004973.1 | PF13920.1 | zf-C3HC4_3 | 168 | 213 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.487 |
| SRR1783600 | control | 2.227 |
| SRR1783602 | moderate drought stress | 2.562 |
| SRR1811619 | moderate drought stress | 2.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.849 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.961 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.670 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.951 |
| SRR2868004 | Drought Stress (root) | 9.502 |
| SRR2967015 | Control (root) | 6.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.120 |
| SRR9715740 | Leaf | 1.608 |
| SRR9715741 | Leaf | 1.116 |
| SRR9715739 | Root | 11.626 |
| SRR9715742 | Root | 5.371 |
| SRR9715743 | Root | 5.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.334 |
| SRR8749028 | MeJA induced 9h | 4.333 |
| SRR8749029 | MeJA induced 9h | 3.826 |
| SRR8749030 | Uninduced | 1.455 |
| SRR8749031 | Uninduced | 1.296 |
| SRR8749032 | Uninduced | 1.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.768 |
| SRR8400027 | Control - Root | 11.551 |