Gene detail

Gene detail information of Glyur000035s00004970

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04020.1	1.00E-97	fibrillin
NR	XP_004486195.1	4.27E-170	PREDICTED: plastid-lipid-associated protein, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9ZWQ8\|PAP_CITUN	1.00E-155	Plastid-lipid-associated protein, chloroplastic (Precursor)
trEMBL	tr\|V7BSY2\|V7BSY2_PHAVU	1.00E-166	Uncharacterized protein {ECO:0000313\|EMBL:ESW19671.1}

Sequence

Transcript Sequence

>Glyur000035s00004970.1
TCTCAATTCTCAAATCTCAATCGTCTTCTTTTCCATTGTGTGGACAATCAAATCTCAATCGTTGGTTATCGCGGCATGTTGGGTTGTTTCTATATTAAATATAAATATTAAATTCACCGCTTCTCCGTCTCTGTTTTGCTCTGTCTTCATTTCATTATTTGCTCTTTCTCTCTGAACCTGCGAACAAATGGCGTCTCTTTCCTCTCTCAACCAAATCCGCAGCAAGACCCTTTCGGTCACGACCACGCCGCTCCACTCGACGGAACCTTCAATTTTGCCACCGAGCACCGTCGGAATTCGGAGCAAATCCGCCGGAAGACAGAGGATCGATATCGCGGCCGGTGCTCCGAGGCCGGTGGTCCATGTCCGAGCCGTGACGGACGACGACGAGTGGGGCTCAGAGAAGGAGGAGCCTTACGCAGCTGGCGTGGCTGTAGCGGAGGCGGAGGAGAAACCGACGGAGACGGAGACGGAGAAGCTGAAGAAGGCTCTTGTGGATTCATTTTACGGCACCGATCGTGGACTCAAGGCGACCAGCGAAACNAGGGCGGAGATCGTTGAGCTTATCACACAGCTCGAGGCCAAGAACCCCAACCCTGCACCCACCGATGCCTTGACTCTGCTCAATGGAAAATGGATTCTCGCGTATACATCCTTCTCAGATTTATTCCCATTGTTGTCACATGGAACACTGCCACTAGTCAAGGTAGAAGAAATATCTCAGACCATTTACTCGGAGAATTTAACTGTCCAAAACTCTGTTCAGTTTGCTGGCCCATTGACTACAACTTCGATTAGCACCAATGCCAAATTTGAAGTTAGAAGTCCAAAACGTGTGCAGATCAAGTTTGAGGAAGGTATCATTGGCACTCCACAGTTGACAGACTCATTAGAGATACCAGAGAATGTGGAATTTCTGGGGCAACAGATTGATCTCACACCTTTCAAAGGCATACTTACTTCTATCCAAGACACGGCATCATCGGTTGTGAGAACATTTTCCAGCAGGCCTCCCTTGAAGTTCCCAATTTCCAACACCAATGCTCAATCCTGGTTACTTACTACATACCTTGATGAGGAACTACGCATTTCCAGGGTTGATGGTGGCAGTGTGTTTGTTCTTATCAAGGAAGGCAGCGCTCTCTTGAAAAGCTAAAGAAATTGATTTACTTTTTTTTTTATGTCACTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	139483	141351	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00004970.1	PF04755.7	PAP_fibrillin	97	312	1.30E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.809
SRR1783600	control	30.001
SRR1783602	moderate drought stress	44.239
SRR1811619	moderate drought stress	45.548

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.973
DRR006520	Root Summer glycyrrhizin high producing strain	53.383
DRR006521	Root Winter glycyrrhizin high producing strain	46.836
DRR006522	Root Winter glycyrrhizin high producing strain	45.307
DRR006523	Root Summer glycyrrhizin low producing strain	48.112
DRR006524	Root Summer glycyrrhizin low producing strain	46.782
DRR006525	Leaf Summer glycyrrhizin high producing strain	501.217
DRR006526	Leaf Summer glycyrrhizin high producing strain	499.418

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.498
SRR2868004	Drought Stress (root)	39.662
SRR2967015	Control (root)	32.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	181.800
SRR9715740	Leaf	314.253
SRR9715741	Leaf	153.951
SRR9715739	Root	53.552
SRR9715742	Root	35.525
SRR9715743	Root	35.535

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.723
SRR8749028	MeJA induced 9h	49.853
SRR8749029	MeJA induced 9h	42.641
SRR8749030	Uninduced	47.756
SRR8749031	Uninduced	39.771
SRR8749032	Uninduced	51.982

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.833
SRR8400027	Control - Root	38.861