Gene detail information of Glyur000035s00004966 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G04180.1 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_004486193.1 | 0 | PREDICTED: katanin p60 ATPase-containing subunit A1-like [Cicer arietinum] |
| COG | YP_006441152.1 | 8.00E-65 | AAA ATPase central domain protein [Turneriella parva DSM 21527] |
| Swissprot | tr|Q9MAK9|PS10B_ARATH | 2.00E-31 | 26S protease regulatory subunit S10B homolog B |
| trEMBL | tr|A0A072V6H2|A0A072V6H2_MEDTR | 0 | P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313|EMBL:KEH36938.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 109081 | 115178 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00004966.1 | PF00004.24 | AAA | 349 | 479 | 7.50E-32 |
| Glyur000035s00004966.2 | PF00004.24 | AAA | 349 | 418 | 2.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.778 |
| SRR1783600 | control | 3.684 |
| SRR1783602 | moderate drought stress | 4.181 |
| SRR1811619 | moderate drought stress | 4.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.635 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.566 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.739 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.192 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.924 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.990 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.882 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.877 |
| SRR2868004 | Drought Stress (root) | 6.488 |
| SRR2967015 | Control (root) | 5.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.528 |
| SRR9715740 | Leaf | 6.561 |
| SRR9715741 | Leaf | 3.824 |
| SRR9715739 | Root | 0.835 |
| SRR9715742 | Root | 2.056 |
| SRR9715743 | Root | 1.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.532 |
| SRR8749028 | MeJA induced 9h | 17.293 |
| SRR8749029 | MeJA induced 9h | 13.795 |
| SRR8749030 | Uninduced | 10.552 |
| SRR8749031 | Uninduced | 6.387 |
| SRR8749032 | Uninduced | 5.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.027 |
| SRR8400027 | Control - Root | 5.983 |