Gene detail

Gene detail information of Glyur000035s00004959.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04320.1	0	malonyl-CoA decarboxylase family protein
NR	XP_004486185.1	0	PREDICTED: malonyl-CoA decarboxylase, mitochondrial-like isoform X1 [Cicer arietinum]
COG	NP_435327.2	7.00E-67	hypothetical protein SMa0151 [Sinorhizobium meliloti 1021]
trEMBL	tr\|I1MFK5\|I1MFK5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G11810.1}

Sequence

Transcript Sequence

>Glyur000035s00004959.2
GTATCAATCATAGAGGAAAAAGGCAAAGTGGATTTGATTATACCGGTTATTGATTTCGATTTCTCACCCACACATACAAACGCCCGTTTCGCGAATAAATACGAAAAGAAAAAAACATGAACAAGAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAGGCCGAACGATCGAACCAACCCTTCNCTCTCTCCTCTCCCTCTAGCTAACGCGGCGAGTAAAATGCAGCAGCAGAATTCACCGGACAGCAAATCGCCAGGAGAAGGAAGTTCAGCACCTAATAACTCAGGCAACTCCGAGAGCGAGTTNAAGCGTGTCCATGCCTCCATGCTCTCTGCCATTTCAATGAGCAAAACGGAAGTTCTAGATGATGTGCTTAATAACTTCTCTGAGTTGCTCCTTGTCCTTGCTAGAGATTATGATCTCAATAGATCACAAGTTCGTGAACTGATAAAACAGTACCTTGGACTTGAACTTCCTGCTGACAAAGCTCAAGTGAGTGGCTCTGAAGAAGAAGGCTTGTTTTCTTCTTTCTATCGCATTGAGCGGAATTTGAGGCATGCCCTTCAACCAGTTTATGAAGTTCTNTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGTTCTTATCCATTCTTCGAGCAGATATCTTGTCTATTCTCACAGAGGAAAATATTGCTTCTCTGAGAGCATTGGATTCTTATTTNAAGGAAAAACTTAGTACGTGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAAATTACATGGGATGATCCTGCTTCTCTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGGCTGGGAATTGGTCGTCGTTGTTTTGGATATTTACATCCAGCAATTCCTGGTGAACCTTTAATTTTCATTGAAGTTGCACTACTGAAGAATGTGGCTCAAACTATACAGGAAGTTTTATGGGATAGTCCTCCTATTCCTGAAAGTGAGGCAACATGTGCATTGTTCTACTCTATATCATCAACTCAGCCTGGCTTAGCAGGGATCAACTTGGGAAAGTTTCTTATTAAACGTGTTGTAANACTGGTGAAAAGAGAGATGCCACATATTTCTACTTTTGCAACTCTCAGTCCCATCCCAGGATTCATGTCATGGCTCTTATCCAAGTTAGCATCTCAAACGGTGTTGGCTGAAGGAGACATGTCACCACCACTAGCTGAGGGATCCAGTTCCACATTCTACGAGAACATACTTAAACTAGAAGAAGAAGAAGCACTCATGAGTTTACCTAAAGATATAGCCACAGGAAAAAACGGAATGGAAGTGATGCTCAACCTGCTTACTTCTACATCCTATAAGTGGATCCATTCTCCTGAAGTTCTGTCAGCATTGAAACCCCCTTTGATGCGTTTATGTGCCAGATACCTTTTGCAAGAGAAGAAAAGAGGAAAAGCTTTGGACTCGGTAGCAAATTTCCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAATTGGTTGGCAGACCGATCAGAAAAGGGCCTATCTCAAAGTGGAGGCATCATGGTGAACTATGTCTATAGTCTGGATCACATAGAAGAATATGCTCATTCATACTTCAGCAATGGCAAAATCCATGCTTCAAGTGATCTCCATCGCCATGTTGAGCCACAGAGTGACAAGTAATGATGAAGTATTCTTGGTCAGAGCACACTGGATGGTTTTATCAANACAATGGGACAAATGCAATTAAGTCTAAAATTGAAGAAGCTTGTATTTTATNTTGTTGATGATTTCTGTACAGAGAATATAAGGCAGCTGATTACGTATCTAATGATTCTAATCCAATTCGTTGGTGAAATATGATAGGAGACAGGTTGCTAATTTGCCCTGTTATTTGGTCATTGATGATGCTACTCTCTTACACGAGGTACATAGGAGTAAAGCTAGGATGAACATTTCATGCCTGGTAAACCTCGAGCCATACAATGTGATGNGTAAATACTATATAATGTGATGTGTAAAATACTTTACTGACAACAGACCTTTTCCCTTAGTGAAGAGTGTGCAACTGTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	28598	37413	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01578	MLYCD	EC:4.1.1.9	Propanoate metabolism	map00640
			Propanoate metabolism	map00640
			beta-Alanine metabolism	map00410
			beta-Alanine metabolism	map00410
			AMPK signaling pathway	map04152
			AMPK signaling pathway	map04152
			Peroxisome	map04146
			Peroxisome	map04146

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

molecular_function
GO:0050080 malonyl-CoA decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00004959.2	PF05292.6	MCD	142	490	2.60E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.491
SRR1783600	control	11.607
SRR1783602	moderate drought stress	11.135
SRR1811619	moderate drought stress	11.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.150
DRR006520	Root Summer glycyrrhizin high producing strain	12.557
DRR006521	Root Winter glycyrrhizin high producing strain	11.105
DRR006522	Root Winter glycyrrhizin high producing strain	10.873
DRR006523	Root Summer glycyrrhizin low producing strain	11.290
DRR006524	Root Summer glycyrrhizin low producing strain	11.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.256
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.853
SRR2868004	Drought Stress (root)	24.290
SRR2967015	Control (root)	22.257

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.319
SRR9715740	Leaf	5.585
SRR9715741	Leaf	7.674
SRR9715739	Root	1.435
SRR9715742	Root	6.778
SRR9715743	Root	4.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.543
SRR8749028	MeJA induced 9h	9.477
SRR8749029	MeJA induced 9h	5.944
SRR8749030	Uninduced	5.785
SRR8749031	Uninduced	5.298
SRR8749032	Uninduced	3.794

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.555
SRR8400027	Control - Root	16.730