Gene detail information of Glyur000035s00004958 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G04330.1 | 5.00E-55 | Chaperonin-like RbcX protein |
| NR | XP_004486187.1 | 2.44E-101 | PREDICTED: uncharacterized protein LOC101511259 [Cicer arietinum] |
| trEMBL | tr|I1MFK4|I1MFK4_SOYBN | 6.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G11800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 27730 | 30422 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00004958.1 | PF02341.10 | RcbX | 59 | 160 | 1.40E-13 |
| Glyur000035s00004958.2 | PF02341.10 | RcbX | 59 | 113 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.103 |
| SRR1783600 | control | 3.293 |
| SRR1783602 | moderate drought stress | 2.837 |
| SRR1811619 | moderate drought stress | 2.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.880 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.541 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.883 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.687 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.405 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.197 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 85.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.438 |
| SRR2868004 | Drought Stress (root) | 7.523 |
| SRR2967015 | Control (root) | 6.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.050 |
| SRR9715740 | Leaf | 3.625 |
| SRR9715741 | Leaf | 3.069 |
| SRR9715739 | Root | 0.677 |
| SRR9715742 | Root | 1.400 |
| SRR9715743 | Root | 1.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.907 |
| SRR8749028 | MeJA induced 9h | 1.981 |
| SRR8749029 | MeJA induced 9h | 2.482 |
| SRR8749030 | Uninduced | 2.824 |
| SRR8749031 | Uninduced | 2.325 |
| SRR8749032 | Uninduced | 1.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.505 |
| SRR8400027 | Control - Root | 5.351 |