Gene detail

Gene detail information of Glyur000035s00004956

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62305.1	1.00E-128	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	XP_004486183.1	0	PREDICTED: uncharacterized protein LOC101510083 [Cicer arietinum]
trEMBL	tr\|A0A072V4K7\|A0A072V4K7_MEDTR	0	Core-2/I-branching enzyme {ECO:0000313\|EMBL:KEH36919.1}

Sequence

Transcript Sequence

>Glyur000035s00004956.1
CAGCTGCATCCAATTCCAATTCAACACCTTACTGATGCATTGATGTGGGAGTGAGTGAGGAATGGCGGCAAGGGGCGTGAAGAGACGCCACGTGGCGAGTAGGTTCAACTGGAAGCTGCTGATCCTCTTCTCCGCTTCCCTCTCCTGCGTCGTCGTTTTGGTTGCTGCGGCTCTCTTCACGCTTCACTCTAGCAGCAGCAATAGCAAACCCCCAACAATCCCAGTTTCTCGCGTCTTCGAGGGCCCTCCCAAGATCGCCTTTTTGTTCCTCGTTCGCCGCAACGTCCCCCTCGATTTCCTCTGGGGTGCTTTCTTCCAGAATGGCGACGTTGGGAATTTCTCGATTTATGTACATTCGTCGCCTGGGTTTGTGTTGGATGAGTCAACCACCAGGTCTCACTTCTTCTACGGTCGACAGCTCAGCAATAGCATTCAGGTTTCATGGGGAGAAACAAGCATGATTCAGGCTGAAAAGCTGTTACTGTCAGNGGCTTTGGAAGACCCTGCAAATCAAAGATTTGTTCTTCTCTCAGACAGCTGTGTTCCTCTGTACAACTTTTCCTACGTGTACAATTATATCATGGTTTCTCCAAGGAGTTTCGTGGACAGCTTTCTTGATGCAAAAGAGGGCCGCTACAACCCAAAAATGTCACCTAAAATACCAAGGGAAAAATGGCGTAAAGGGTCCCAGTGGATCACCTTAGTTCGTAAACATGCAGAAGTGATTGTAGATGATGATGTTATCTTTTCTGCCTTTAAGAAATACTGTAAGAGACGTCCACCAATTGATACCAGAAAGGGAAAGCTGAATCTTAAACTTCAGAAGCAGCACAACTGTATTCCAGATGAGCACTACGTGCAGACATTGCTTGCTATGCATGGCCTTGAAGGTGAACTTGAACGTAGAACATTGACCTATACCCTGTGGAACCAGTCTGCAGNAAAAATGGAGAATAAAGGCTGGCATCCTATTACTTTCAGCTATGCAAATGCTGGCCCTCAAAGGATAAAGGAAATGAAGGACATCAACCATGTATATTATGAGACCGAGTACAGGATAGAATGGTGCCGTACCAATTCAACATTCGTTCCGTGCTTTTTGTTTGCTAGGAAATTCTCTAAGGGAGCTGCTATGCGCTTGTTGAGCGCGGGAGTTGTAGACCACTTTGAAGTTTCTGCATTGTTAGCCACTTCCACTACCTCATGATGACATGACCTCACTTCACTTGTGCTTCTCTCCAAATAGCTCTTTAGCCAGTGTATACTGATTACTGACTGACCTACTTAGACATATACTTCCAATGTCAAATGAGGGATCACTTCAAAAGTTATATACATCATACTCCAGAAAAACAGATTTTGAAGGCAAGTTTGTAGCTCTGGTTGAAATAGTTAATATATGGGTAAGGCAAAGTAGCTGCGGATTAGGACCATTTTATCTGGCTCAGTGAGAGGTTTTTGTACATCAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	14601	19252	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00004956.1	PF02485.16	Branch	65	320	1.00E-80
Glyur000035s00004956.2	PF02485.16	Branch	65	320	1.00E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.424
SRR1783600	control	16.514
SRR1783602	moderate drought stress	19.432
SRR1811619	moderate drought stress	19.284

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.902
DRR006520	Root Summer glycyrrhizin high producing strain	18.045
DRR006521	Root Winter glycyrrhizin high producing strain	90.621
DRR006522	Root Winter glycyrrhizin high producing strain	88.477
DRR006523	Root Summer glycyrrhizin low producing strain	24.559
DRR006524	Root Summer glycyrrhizin low producing strain	23.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.085
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.180

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.377
SRR2868004	Drought Stress (root)	31.080
SRR2967015	Control (root)	28.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.571
SRR9715740	Leaf	22.645
SRR9715741	Leaf	19.338
SRR9715739	Root	6.847
SRR9715742	Root	13.068
SRR9715743	Root	12.131

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.853
SRR8749028	MeJA induced 9h	19.027
SRR8749029	MeJA induced 9h	15.836
SRR8749030	Uninduced	16.940
SRR8749031	Uninduced	7.331
SRR8749032	Uninduced	8.830

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.486
SRR8400027	Control - Root	28.260