Gene detail

Gene detail information of Glyur000034s00002991

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05710.2	2.00E-136	syntaxin of plants 43
NR	XP_003556534.1	0	PREDICTED: syntaxin-43-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SUJ1\|SYP43_ARATH	0	Syntaxin-43
trEMBL	tr\|I1NJ45\|I1NJ45_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G38300.1}

Sequence

Transcript Sequence

>Glyur000034s00002991.1
GAAAACCCCCTCCCTCGTCTTTGTTTCTTCCGGTTCAACTGTAACGAAACGACGTAGCATTCCATTTGGTGTGTGTGTGTTGTTTCAGATCCTTGGAATCTGAATGGCGACGAGGAATCGCACTCTGCTTTTCCGAAAGTACAGAAATGCATTGAAGAGTGTCCGTGCTCCGTCCACCTCTACGCCACCGTCAACCTCCTCGGCCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACGCTCCCCTCAGTACCGACGATCCCGGTAATTCGAGTAAGGGTTTAAATCCAATTACGGTGGGGCTACCTCCGGCGTGGGTGGATTTATCCGAAGAAATATCCTCAAATGTGCAACGTGCACGAACACGAATGGCAGAGTTAGCCAAGGCTCATGCGAAGGCCTTAATGCCATCATTTGGAGATGGGAAGGAAGATCAACGTGCTATTGAGTCACTAACACACGAGATAACTGACTTAATCAAGAGATCGGAGAAGAGACTGCGGAGACTTTCTGCTACTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACATAAATGGAAGTAAATCTAGATTTGAAGATGATGACTTGGATAATATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAGTTGAAAGAGAAAGAGAGATCCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACTGTTGAGGATGGCCTTAAACAGCTACAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCTACGGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTAATCATCAAGGAAATTATTTTGTGATGCATGGTGATATTTCATTTTTATTTTAAATATTTGGTCACCTCTCATTGGAGTGACCTTTCCATTCACATACCATCTCTTGCCTGCTGGGACATAGTAAAGCAGCCTGTCTTAGAGAAGACCAAGGAGTTTTGGGGTAGCCAGCCAAACCATACAGTGGCTGAAGAGACCATTTTAATTCTCTTGCAATATTTTTTTTTGTTTTGCCACGGCGGAGGTAGGGCGGAGTAGGTGTGTTAGAAGAAGAGCTTGGTATAGTATGAAAGGATACACAAGGCCAGAAAATGTACAGAGCCGGTTGTACCTCTACTTAAACATTCTTTGCCGGCNGAACCGGGTGGTGAATTCCTTTTCATGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	510964	514513	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005484 SNAP receptor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002991.1	PF00804.20	Syntaxin	77	172	5.30E-11
Glyur000034s00002991.1	PF05739.14	SNARE	234	296	1.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.930
SRR1783600	control	15.975
SRR1783602	moderate drought stress	9.848
SRR1811619	moderate drought stress	9.786

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.794
DRR006520	Root Summer glycyrrhizin high producing strain	12.391
DRR006521	Root Winter glycyrrhizin high producing strain	6.286
DRR006522	Root Winter glycyrrhizin high producing strain	6.240
DRR006523	Root Summer glycyrrhizin low producing strain	8.677
DRR006524	Root Summer glycyrrhizin low producing strain	8.913
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.351

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.013
SRR2868004	Drought Stress (root)	8.962
SRR2967015	Control (root)	10.890

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.536
SRR9715740	Leaf	4.356
SRR9715741	Leaf	3.202
SRR9715739	Root	2.465
SRR9715742	Root	4.704
SRR9715743	Root	3.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.845
SRR8749028	MeJA induced 9h	6.678
SRR8749029	MeJA induced 9h	4.580
SRR8749030	Uninduced	6.327
SRR8749031	Uninduced	3.338
SRR8749032	Uninduced	2.974

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.902
SRR8400027	Control - Root	11.436