Gene detail

Gene detail information of Glyur000034s00002987

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G56310.1	2.00E-178	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	KHN20272.1	0	Putative exonuclease mut-7 like [Glycine soja]
COG	YP_004051432.1	5.00E-15	3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
Swissprot	tr\|Q84LH3\|WEX_ARATH	4.00E-15	Werner Syndrome-like exonuclease
trEMBL	tr\|K7N5C5\|K7N5C5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G38330.3}

Sequence

Transcript Sequence

>Glyur000034s00002987.1
CCACTGTTCTGCTATTTTCCTCGAAGGTTAGTTCGTCTCTGTTTTCCTTGCATGGGCTATTTTGCTTGTCATATTCAGAAAAGAAAAAAAGGGAAAAGCAACTGAAGAAAAGTATGTCTTTTCTTTTCTTTATGGATTTTCAATGTTTCTTTTCTGAATTTATCTTCAAAAAGGTTGAAAAACAATATTTCTATTAAAACCACTGAAATTCTCAACCGCAGATCAAACACTGTGTACTTAAGTGAATGGAACTGTTCTCTTTAGCTACCTCTGCATTTTAACATTTTTAATTCATGAATTAAAGCAGAGTGAGAGAATCTGTGCTCCTTGATTTTTGTATCNCGTTACTGATCCTAATCCTATGTTTGCTTAAGGGTTTTCAAGACTTCTTGAGCGTTATGTTTCCAGAGCGANATTGCGAAAAGATTTCACCTATCTATTTGAGATTCTGAGTCACTAACATGCTAATGTGGAACCACTAAGTTCAACTGCTCCCTATTGTATNAGTGTTCTGATTGTGAATCTCGATGGTTCATCTTCATTGTTGGTNGGTGTTATCTTAGATATTTGTTACTTCCTTGAGTATAGTTGGTGTTCCTTACGTATAAGGGAGCCATTCATTTAAAAGCAGGCTTTGATTTAGAGCTTGGTTGATCATTGGTGCATGGAATTAAGAACCATCATGTGCGGGCCTGTAACTTGCCACTTCAAACNGTTATTTAAAACATTGCTGCTCTCATTACAATTTCTTTCCAGGGATGGGTTTGGAGGAGAATGTAGCTGAGATAGACAACAAAGAGGACAATGCTTCCCAAAGATGGACCTTATGCACACATGCTTTCCATGATTTGACGCATGTCTCTCCCGTGGTATTTTTATTCCTGCTGAAAGAATGTTATTTTTATGGTACATGTAAGGCGACAGTGAAATTCCGAGCCCTTCAAAATCAAGTATATCTTGTGCTTCATAATGATCCAAAACCTGGACCAGCAACTTTTATTGTTCAGTGTCTGTACGTGTCTCCTTTATTTGAAGATCATAGTCAAGGATTTACTCATTTGATTATATCTGCTCTTCGCCGCTTCATGAAAAGATCAACCACTTCAGACAACTCCTTGGAAGTGAAAAACTCGGCTGCCCACCTACTCGTTCATAGTATTAGGAGCCAGATCTATCATGATGAAAATATTGTCATGAAAATAGTGGAGACTTTTGATGTAAAACTAACAAATATTGAGAAAGCCCTGTGCCAGATTAAGGAAAAAGATGATTTAAGNTGTGGCATGGCAAAAGAATTTATTGAGCAGTATATTTTTGAATTGGTGAAATCCCAATTGTACATGACAGCTGTCACTTTAATNGAGCATTTCTCTATCTGCCATTATGCCCAATCTTTTCTCTTTGATATGATAAAGAGTAATCAATTCAAAGCAGCAGAGAAGTGGGCAACATTTATGGGGAAGCCAATGTTGTCCATACTTGTTGAGAAGTTCATTGAGAGGAACATGCTAAAGGATGCCTACGNGATTATAAAGAAAAATAATTTAAAGGAGGATTTTCCAGATGTATACAAGAAGTGTAAAGAAAGCTCACTAAAGAGTTTAGCAGAAAAAGGATGTTGGGATGTTGCCGAGGCTAGAACAAACAATGATAGACAGCTTATGCAATATTTGGTTTATTTGGCAATGGAAGCTGGTTACATGGAGAAAGTTGATGAACTGTGTGATCGGTACTCCCTAGACAGGNTTTTGGATATCAAAGACAAAGAACCTGAGACAAGTATCCTGCAAGGACGTTATTTACATCTTGATGAACTGTCAGTTGAAGACATCATTTGGGTTGATGAAGTTGAAGGTTTGCTTGATGCAACATGTCATATTGAGGGTGTTAAAGTTGTAGGTCTTGACTGTGAATGGAAACCTAATTATATAAAAGGCAGCAAGCCAAATAAGGTTTCTATCATGCAAATTGCTTCTGAAAAGAAGGTTTTCATCTTTGATCTGATAAAGTTACACAGAGAGGTGCCTGAAATTTTAGACGACTGTCTAACTCGCATTTTGTTGTCACCTAGAATTCTAAAACTTGGGTATAATTTCCAGTGTGATATAAAGCAACTTGCTCACTCATATGAAGAGCTGAAATGCTTCAAGAACTATGAAATGTTGTTAGACATCCAGAATATTTTTAAAGAAGCTCGGGGTGGTTTGGCTGGGCTCTCAGAGAAAGTATTGGGTGCTAGTTTAAACAAGACAAGACGTAACAGCAATTGGGAGCAACGACCTTTAACTCCAAATCAACTAGAATATGCTGCTCTGGATGCTGTTGTGCTTATTCACATATTCCGCCAACTTCCTGGTCAAGGACAGGATAAGGCTGAGTGGAAGTCTTTNATCGTGTCCCACACGGAAAACACCCAGAAATCCAAGAAATCCAAGAAAATATGTACCAAAAGTTGAAGAGACCGTGATTGAGACCAACAAGCATTGATCCTCAACTGACACGTAAATTTTTTGAATTGATTAAAGTGTAAAATGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	489005	494818	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006139 nucleobase-containing compound metabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0008408 3'-5' exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002987.1	PF01612.15	DNA_pol_A_exo1	359	531	8.50E-23
Glyur000034s00002987.2	PF01612.15	DNA_pol_A_exo1	359	531	8.50E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.492
SRR1783600	control	2.365
SRR1783602	moderate drought stress	2.069
SRR1811619	moderate drought stress	2.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.028
DRR006520	Root Summer glycyrrhizin high producing strain	1.919
DRR006521	Root Winter glycyrrhizin high producing strain	2.158
DRR006522	Root Winter glycyrrhizin high producing strain	2.059
DRR006523	Root Summer glycyrrhizin low producing strain	1.606
DRR006524	Root Summer glycyrrhizin low producing strain	1.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.314
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.941
SRR2868004	Drought Stress (root)	7.410
SRR2967015	Control (root)	8.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.332
SRR9715740	Leaf	3.301
SRR9715741	Leaf	2.037
SRR9715739	Root	0.276
SRR9715742	Root	0.979
SRR9715743	Root	1.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.520
SRR8749028	MeJA induced 9h	3.945
SRR8749029	MeJA induced 9h	3.200
SRR8749030	Uninduced	2.096
SRR8749031	Uninduced	1.468
SRR8749032	Uninduced	1.500

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.072
SRR8400027	Control - Root	8.495