Gene detail

Gene detail information of Glyur000034s00002985.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05740.1	0	RECQ helicase l1
NR	XP_004495672.1	0	PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cicer arietinum]
COG	YP_007173256.1	7.00E-105	ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q9FT74\|RQL1_ARATH	0	ATP-dependent DNA helicase Q-like 1
trEMBL	tr\|G7I9G1\|G7I9G1_MEDTR	0	RecQ family ATP-dependent DNA helicase {ECO:0000313\|EMBL:AES61452.1}

Sequence

Transcript Sequence

>Glyur000034s00002985.1
ATGGAGATGGGAAGCAGTAGCAAGACGAAGAAGCATGATTTGGAGTTCGAGAAAGTTCGGTTAATCAGTTTAGCCCTTGATTTCGGCTTCGACGAACACTCCGCCAACCAATGCTTGGACCGTCTCATCGCTCTCTACGGTACGCTACCCACCACTAACCAATTCATTCTCATTTCGACGCATTTAACCGAAGGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTAGGTGACGATGGTCGTGATTTTATCACCGTCGAGCACTGCGGCGATGATTTCCTCACGGCTCTGGCGGAGTCAGTGCAAGACACTGAGGAATGGGATGACCCGCGCGAAATGGAATCACAAGCGTGTGGAAATTTGAGTCACGTGCTTGACAATGGTGTTGGCACGTGCGCTGATGCTTCCAGATGCTTCATTGATATTACTGACGATTCGCCTCAACCTCAGAAACACCAGAAGAAGAAGAAGACAGTTGTGGAGCTGGCTTCAAGTGACGACGATGTGGATATGGACTTTACTATTTCAAGGGGAAAACAACATACCCCTAAATCCATGGATTGCAGAAGTGGCATCACTCAAGACTCGGTTTCATCAACTTCTAGCAAAATACAATCCTCCTTTACAGCAAAGGATAGAAACAGTACTCTCACTTATGAAGAATTGCAGGCGCTAGATGATATTGAATTAGCAAATGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCTTTCATTCTCATGCCCACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAGTAGTTATATCTCCCTTACTTTCACTCATCCAGGATCAGATAATAACACTTAACCTCAAGTTTGGAATACCTGCTACTTTTCTAAATTCTCAACAAACTGCTTCCCAAGCCACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCTTCATGCAAGCTCTTGTATGTGACACCCGAGAGAATTGCTGGAAACCAATCATTTCTTGGGATTCTAAAATGCATGCATCAGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTAGGATCTCTTAAGCAAAACTTTCCAGATATACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGTAAGGACATCTTAAATGCTTTAAGAATCCCACNTGCCCTTGTTCTTGAAAGAAGCTTTGACAGACCGAATTTGAAGTATGAAGTGATTGTTAAAACAAAGGAACCACTGAAACAGCTTGGACAGCTNCTAATGGATCGTTTCAAGAATCAGTGTGGAATAGTTTACTGCCTGTCAAAAAGTGAATGTGTCGAAGTCTCAAAANTTTTGAATGGGAAATGTAAGATTAAGACAGTGTATTACCATGCTGGCTTGGCTGTCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACCATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCAGTTTGCATGGCTTTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTAAAGGTTGAATGCCGGAGACAAACCTTACTTGAACACTTTGGAGAATCTTTTGATAGAAAAAACTGCAAGAATGGATCTAACCCCTGTGATAATTGTATCAAGACTGCATTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	480832	485994	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10901	BLM, RECQL3, SGS1	EC:3.6.4.12	Homologous recombination	map03440
			Fanconi anemia pathway	map03460

Gene Ontology

biological_process
GO:0006310 DNA recombination

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

GO:0008026 ATP-dependent helicase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002985.1	PF00270.24	DEAD	245	414	3.40E-16
Glyur000034s00002985.1	PF00271.26	Helicase_C	486	558	3.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.450
SRR1783600	control	1.456
SRR1783602	moderate drought stress	7.300
SRR1811619	moderate drought stress	7.461

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.121
DRR006520	Root Summer glycyrrhizin high producing strain	1.053
DRR006521	Root Winter glycyrrhizin high producing strain	0.333
DRR006522	Root Winter glycyrrhizin high producing strain	0.336
DRR006523	Root Summer glycyrrhizin low producing strain	0.735
DRR006524	Root Summer glycyrrhizin low producing strain	0.800
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.187
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.197

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.506
SRR2868004	Drought Stress (root)	1.824
SRR2967015	Control (root)	1.204

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.532
SRR9715740	Leaf	7.427
SRR9715741	Leaf	3.203
SRR9715739	Root	1.649
SRR9715742	Root	3.179
SRR9715743	Root	2.372

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.400
SRR8749028	MeJA induced 9h	1.551
SRR8749029	MeJA induced 9h	1.281
SRR8749030	Uninduced	0.158
SRR8749031	Uninduced	0.118
SRR8749032	Uninduced	0.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.797
SRR8400027	Control - Root	8.868