Gene detail

Gene detail information of Glyur000034s00002977.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02080.1	8.00E-92	secretion-associated RAS super family 2
NR	XP_004495668.1	6.69E-136	PREDICTED: GTP-binding protein SAR1A-like [Cicer arietinum]
COG	YP_001737337.1	9.00E-20	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|O04834\|SAR1A_ARATH	6.00E-134	GTP-binding protein SAR1A
trEMBL	tr\|I1LB56\|I1LB56_SOYBN	3.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G28910.1}

Sequence

Transcript Sequence

>Glyur000034s00002977.1
AAAAAAAATACACTAATTTTTCAGTACTAGAAATTAAGCTCAAAAACACCTGAACCGGGGTTAGGCGGTGAACAGACCGGTCCGGTCTCTCTCCATCCCCAACATTAACACCACCCAGAGTCCCACCTCTACAATACATGCATCAAAAACTGTTGCAGCAACACACACACACACACACACACACACCCTATATCTATATCTATCTATATATTACATTTACCCAACGGCACCCCCTTCTTCAGTCTGGTTTTGGGACCAGATCTTATGTAATTGTTCAGAGATTGTAATTTATCAGCAGTAGTTGAGAGTGGTATCGAGTATCGAGATCGAGGGGGCGATGTTTTTGTTTGATTGGTTTTATGGTATTCTAGCATCGCTTGGGTTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAAACCACCCTGCTTCATATGCTCAAAGATGAGAGATTAGTCCAGCATCAGCCGACACAGTATCCAACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCCTTTGATCTTGGGGGTCACCAGATTGCTAGAAGAGTCTGGAAAGACTACTATGCGAAGGTAGATGCAGTAGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAGTCTTTGACTACTGTCCCTTTCCTTATCCTTGGAAACAAGATAGATATTCCATATGCTGCCTCAGAAGAAGAGTTGCGTTACAATTTGGGCCTGACCAANTTCACCACAGGCAAGGGCAAGGTAAATTTGTCAGACTCTAATGTCCGTCCTATGGAGGTCTTCATGTGCAGTATTGTGCGGAAAATGGGTTATGGAGATGGTTTCAAATGGCTCTCTCAGTACATCAAATAGTTCATTAGTAAGAGATGGAAGTTTATTCCTATAGTTATGAATTCCAGATGTTAGTACAAATCGCTGTTAAAGAAATTGCAGTAGCTAGCATATTTCAGTTTTTTTTTTGTGAAAATGACTGAGACACCCCTCCCTCTTTAATTAATCCATTATCTTGCTCCAAAGAAAGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	453982	456922	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07953	SAR1	EC:3.6.5.-	Protein processing in endoplasmic reticulum	map04141
			Legionellosis	map05134

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002977.1	PF00025.16	Arf	8	192	2.80E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.106
SRR1783600	control	18.328
SRR1783602	moderate drought stress	12.773
SRR1811619	moderate drought stress	12.877

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.389
DRR006520	Root Summer glycyrrhizin high producing strain	30.636
DRR006521	Root Winter glycyrrhizin high producing strain	12.125
DRR006522	Root Winter glycyrrhizin high producing strain	12.308
DRR006523	Root Summer glycyrrhizin low producing strain	25.603
DRR006524	Root Summer glycyrrhizin low producing strain	25.355
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.050

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.478
SRR2868004	Drought Stress (root)	17.716
SRR2967015	Control (root)	15.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.897
SRR9715740	Leaf	12.449
SRR9715741	Leaf	1.890
SRR9715739	Root	17.507
SRR9715742	Root	10.688
SRR9715743	Root	13.403

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.543
SRR8749028	MeJA induced 9h	13.482
SRR8749029	MeJA induced 9h	22.118
SRR8749030	Uninduced	6.491
SRR8749031	Uninduced	2.607
SRR8749032	Uninduced	6.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.176
SRR8400027	Control - Root	34.601