Gene detail

Gene detail information of Glyur000034s00002976

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62550.1	2.00E-41	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	NP_001237625.1	2.94E-101	uncharacterized protein LOC100305594 [Glycine max]
COG	NP_925635.1	1.00E-18	hypothetical protein gll2689 [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	9.00E-16	Universal stress protein A-like protein
trEMBL	tr\|C6SVT0\|C6SVT0_SOYBN	1.00E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G28900.1}

Sequence

Transcript Sequence

>Glyur000034s00002976.1
CTCATGTTAATCCTAAAAGGCCCACCGTGTTGAAAACCAGAAGNCCGAACCCAGAAACCGCCAATAGATTCAATAAACAAACAATTCATTATCCATTCGGGGTGCTTCCCATTCCCATCACCTCACGTTAAGGTCAAGTAACAAAACATAAAAAAAAAATATAAAAAAAAGATTACTTATATATATTATTATCCATCCATTCAATTCAATCAAGCACATTAAAAGTTTGCACACTTCACNCTTCATTCTTACTGAGTACCTTTTTGTCATCTCAAATCAAGCTTAAGGAATCAATAATGGCTGGCATGACAGATCAGAACGAACGAAGGATCATGGTGGCTGTGGATGAAGGAGAGGAGAGCATGTACGCACTCTCGTGGTGCCTGAAGAACCTACTTTTCCAAGACTCCAAAGATTCCCTTATCCTCCTCTACGTTAAGGCCCCTCGTGCCGTTTATTCAGCCTTCGATGGCACAGGATACCTTTTTTCCTCTGACATAACGGCAACCATGGAGAGGTATAGCCAACAAGTGGCCGATTGTGTNTTGGAGAAAGCCAAGAGATTGTGTAACAACATCCAAAATGTGGAGATGAGGGTAGAGAATGGCGACCCTAGGGACGTGATCTGTCACATGGTTCAAANATTGGGTGTTGATATATTGGTCATGGGAAGCCACGGCTATGGTGTCATCAAGAGGGCTTTCCTTGGAAGCGTGAGCAATTACTGCGCACAGAATGTGAAGTGCCCGGTTATGATTGTGAAGAAGCCAAAATCAACCACNGGAGACATGTAATAATCATCATATGTATATTTGTTAGCTTTTGTTCTATCTGTAAATAGTTTACATCTGTCGCGATTTGTAATTTGGATTGTGCACTTGTTCGTGTTTTGTTCGTTCCTCCTCGAGGGGAATCTCTTTGCCAAATATTAAACCTTAAAGGCTAAAGATGGACTTATTTATTTATAATTATAGTTGGACTTTAATTATTCTCCATTCTTTGATATCTCTTACAATTTATACTCCTTTTTTTTGTTTTTAAACCCAAGAATTTGTTCTCCTATTGACGATGGCTCATAAATTCGTAATCAAGTGAAAGTAAGTGAAGTAAAGAATAAAGACAAGAAATTGTTATAATGTTTTGTAACAATAGAGCAATTTGTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	451182	452806	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002976.1	PF00582.21	Usp	10	156	5.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.210
SRR1783600	control	13.242
SRR1783602	moderate drought stress	29.860
SRR1811619	moderate drought stress	29.900

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.460
DRR006520	Root Summer glycyrrhizin high producing strain	48.253
DRR006521	Root Winter glycyrrhizin high producing strain	1285.680
DRR006522	Root Winter glycyrrhizin high producing strain	1249.190
DRR006523	Root Summer glycyrrhizin low producing strain	382.749
DRR006524	Root Summer glycyrrhizin low producing strain	380.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.719
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.901

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.785
SRR2868004	Drought Stress (root)	27.204
SRR2967015	Control (root)	44.363

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.206
SRR9715740	Leaf	36.226
SRR9715741	Leaf	23.427
SRR9715739	Root	94.307
SRR9715742	Root	48.012
SRR9715743	Root	56.858

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	771.742
SRR8749028	MeJA induced 9h	1073.858
SRR8749029	MeJA induced 9h	1732.063
SRR8749030	Uninduced	480.268
SRR8749031	Uninduced	1218.834
SRR8749032	Uninduced	1852.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.342
SRR8400027	Control - Root	57.548