Gene detail

Gene detail information of Glyur000034s00002975

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G56340.2	1.00E-159	calreticulin 1a
NR	XP_003591212.1	0	Calreticulin [Medicago truncatula]
Swissprot	tr\|Q9XF98\|CALR_PRUAR	0	Calreticulin (Precursor)
trEMBL	tr\|G7I9H2\|G7I9H2_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40325.1}

Sequence

Transcript Sequence

>Glyur000034s00002975.1
AGCAAGGCAGGAAGAGCCGCTATATAGAAGCGGAAGCTCACTCAGTTCCAAGTAGCTCTCTCTCTCTCTCTCTCTCTCATTCTCTTTCCATCTCTGATAGTAATGGCGCTTAGGGTGCGTCACCCTAACCTTCGCTCTCTCATTCTTCTCTCCCTTTTGGCGATCGCTTCCGCCAAGGTCTTCTTCGAGGAACGCTTCGATGATGGATGGGAGAGTCGGTGGGTTAAATCTGATTGGAAGAAAGATGAGAACTTGGCCGGGGAATGGAACTACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGGTATTCAAACAAGTGAAGACTACAGATTCTATGCNATTTCTGCTGAGTTCCCTGAATTCAGCAACAAGGATAACACACTAGTCTTCCAATTTTCTGTCAAGCATGAACAGAAACTTGACTGTGGTGGTGGTTACATGAAGCTGCTTAGTGGGGATGTTGATCAGAAGAAATTCGGTGGGGATACTCCTTACAGTATCATGTTTGGTCCAGATATCTGTGGTTACAGTACCAAGAAAGTACACGCTATTCTGACCTACAATGGCACAAACAACTTAATAAAGAAGGATGTTCCTTGTGAGACTGACCAACTTACCCATGTTTACACATTCATCCTCCGTCCAGATGCAACCTACAGCATCCTGATCGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGAATCTTCTCCCTCCAAAGAAAATCAAGGATCCTGAGGCCAAAAAACCAGAAGATTGGGATGATAAAGAGTATATTCCTGATCCTGAGGATAAGAAACCAGAGGGGTACGATGACATCCCAAAGGAAATCCCAGATCCTGATGCCAAGAAGCCTGAAGACTGGGATGATGAGGAAGATGGTGAGTGGACACCACCTACCATTGCCAACCCAGAGTATAAGGGCCCATGGAAGGCAAAGAAAATTAAGAACCCCAACTATCAAGGAAAGTGGAAGGCACCAATGATTGACAACCCAGACTTCAAGGATGATCCCGATCTCTATGTTTTCCCCAGCTTGAAGTATGTTGGCATTGAATTGTGGCAGGTGAAATCTGGTACGTTGTTTGACAATGTCGTAATTACTGATGATCCTGAGTATGCTAAGCAACTGGCTGAAGAAACATGGGGCAAACAGAAGGATGCTGAGAAGGCAGCATTTGAAGAGGCCGAGAAGAAGAGAGAAGAGGAGGAAACAAAGGATGATCCAGTTGACTCNGATGCCGAAGAAGACGAGGAAGATAATGATGAAGCTAGCAACGACTCTGATGCTGAATCAAAGACGGAAGCTGGGGAAGACAGTGCTGAAACCAAGGAAGAGGATGTACATGATGAGCTCTAGAGAGTTTGCAAAGCGGATACGGAGTGAGCGAAAGTTATATTCCGGGGCGAAAGTTTATCTTTTTTAGCAGTAGTATTTTTTTTCCTAGAAAGCAAACCGTTGGAAACTGCAAAGCAAAAACGCGAGCTTTTGCTTCATCCCATTAGACTATTTCAGCTGATTAGAACAGACAAAAATGTCTCTCTTTTGAATTGATCTTTTTTATGTTTGATCAATTGAGTTTGCAATTATGAAGCTGCCTCAAAATCTTAATAATTGCTAAAGGATTTTCTGTGTAAATCGTCTGACAAATCTAAAGTCCGGAAGAATTTGCAGGAATTAGAATATTATGCTCTGGTTCATCTAAAGGGGATGGGTTATAATTTAGAGAATATAAAGTATAAAATATGGATTTATAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	446438	450199	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

cellular_component
GO:0005783 endoplasmic reticulum

molecular_function

GO:0005509 calcium ion binding

GO:0005515 protein binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002975.1	PF00262.13	Calreticulin	27	338	7.00E-118

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	378.257
SRR1783600	control	378.662
SRR1783602	moderate drought stress	160.994
SRR1811619	moderate drought stress	160.258

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	607.290
DRR006520	Root Summer glycyrrhizin high producing strain	600.862
DRR006521	Root Winter glycyrrhizin high producing strain	62.494
DRR006522	Root Winter glycyrrhizin high producing strain	61.106
DRR006523	Root Summer glycyrrhizin low producing strain	464.844
DRR006524	Root Summer glycyrrhizin low producing strain	464.290
DRR006525	Leaf Summer glycyrrhizin high producing strain	186.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	184.777

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	940.709
SRR2868004	Drought Stress (root)	475.827
SRR2967015	Control (root)	521.366

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	256.181
SRR9715740	Leaf	122.186
SRR9715741	Leaf	226.844
SRR9715739	Root	73.423
SRR9715742	Root	170.811
SRR9715743	Root	156.571

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	555.108
SRR8749028	MeJA induced 9h	300.697
SRR8749029	MeJA induced 9h	297.571
SRR8749030	Uninduced	159.945
SRR8749031	Uninduced	146.147
SRR8749032	Uninduced	110.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	475.828
SRR8400027	Control - Root	492.430