Gene detail

Gene detail information of Glyur000034s00002970

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26860.1	0	lon protease 1
NR	XP_004144752.1	0	PREDICTED: lon protease homolog, mitochondrial-like [Cucumis sativus]
COG	YP_003116359.1	1.00E-132	ATP-dependent protease La [Catenulispora acidiphila DSM 44928]
Swissprot	tr\|P93655\|LONM1_ARATH	0	Lon protease homolog 1, mitochondrial (Precursor)
trEMBL	tr\|A0A0A0LGF5\|A0A0A0LGF5_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN60995.1}

Sequence

Transcript Sequence

>Glyur000034s00002970.1
AAATCCGTACTTCCGCGACAAGAAAAGGTCAGTTTGGTAAACCGGGCAGGCGAGGGTTTATGAAGGGCTTTAACAATACTACTAACACACAACACAACCCCTTCCGTTTCGCTTCCACTACCCATCAATGGCGGTTTTGGGCACCTGGAAGTTGAAACCACATTCCATTATCTAAAAACCTGTTAGGGCACGAACAATCATTCATTTCCAATTTCCAATTTCCATTATCCCATTCCCACTCCCACGTTCACCCCACCGCCGAATCCAATGCTGAAGCTCATTTCACCCTCGCGCATCCACCGGCTCAACCCCGCCGTGGTTCCGGTGCTCCGACCCGCATCCGACTCCGCGTCGCCGTTGCTTAGAGTGCTGAATTCACTCGGCGGGTTAACTCGGAGGAACAGCCGTTTTGGAGGCCGGGTGTTTTTCTGTTCGGATTCCGGCGACNGTTCCGATCAGGTGGTTGACGCCGAAGTCAAAGCGGCCGAGGAGTCCCAGTCGAAGGCCTCTGCTATCGTGTCCACCTATCCCAGACCCGAAGATTATCTCACTGTTTTGGCATTACCATTGCTACATAGACCCCTTTTCCCCGGATTTTACATGCCAATCTTTGTTAAGGATCCCAAAGTGCTGGCAGCTTTACAGGAAAGTCGAGAACGACAAGCCCCTTATGCTGGTGCTTTCCTCCTTAAGGATGAGCCAGGGGCTGATCCTAGTGTAGTATCTAGCTCTGACACTGAAAAGAATGTATATGATTTAAAAGGGAAAGAGTTGTTTAACCGTCTTCATGAAGTTGGGACTCTTGCCCAAATTTCAAGTATCCATGGGGATCAGGTGATCCTGATTGGTCATCGGCGTCTACGCATAACAGAGATGGTTAGTGAGGATCCACTTACTGTAAAAGTTGATCATCTGAAGGATAAAGCTTATAACAAAGATGATGAGATTATAAAGGCCACATCTTTNGAGGTTATATCGACCCTAAGGGATGTTCTTAAAACAAGTTCACTTTGGAGAGATCATGTCCAGACGTATACTAAGCATATTGGTGATTTTACTTATCCAAGGCTAGCAGATTTTGGAGCTGCGATATCTGGGGCAAACAAATTGCAATGCCAACAAGTTCTTGAAGAGCTAGATGTGTATAAACGATTAAAACTTACACTGGAGTTGGTAAAGAAAGAGATGGAAATCAGCAAGATTCAGGAATCAATTGCAAAAGCAATTGAAGAAAAGATAAGTGGTGAGCAGCGCCGTTATTTGTTAAATGAGCAGCTTAAGGCCATAAAGAAGATTCTTGATGAAGACCATTATGGATTAACTGATGTGAAGGAAAGAATATTGGAATTCATAGCTGTTGGGAAATTGAGGGGGACTTCACAAGGTAAAATTATCTGTCTTTCTGGTCCACCAGGAGTGGGCAAAACAAGTATTGGCCGTTCAATTGCACGTGCATTGAATCGTAAGTTCTTCCGATTTTCTGTTGGAGGATTAGCTGATGTGGCTGAAATCAAGGGGCATCGTCGAACCTATATAGGTGCTATGCCAGGGAAGATGGTACAATGCCTTAAGAATGTGGGAACAGCCAATCCTCTTGTTTTGATTGATGAGATTGACAAATTGGGCAGAGGACATGCTGGTGACCCAGCAAGTGCTTTGTTAGAGCTTCTGGATCCCGANCAGAATGCTAATTTTCTGGACCACTATCTTGACGTCCCCATTGATCTATCGAAGGTTCTTTTTGTTTGCACTGCAAATGTAGTGGAGATGATACCCAATCCCCTGTTGGATAGGATGGAGGTTGTAGCTATTGCTGGGTATATTACTGATGAGAAAATGCACATTGCAAGAGACTATCTGGAGAAGAGTACACGTGAAGCATGTGGAATAAAGCCTGAACAAGTGGAAGTGACTGAAGCTGCTCTTCTTGCTCTAATAGAAAATTACTGCCGAGAAGCAGGGGTCAGGAACCTTCAAAAGCACATAGAGAAAATTTATCGGAAGATAGCACTACAACTTGTGAGGCAAGGGGAAACCATTGATGCTACTGTTGGTAGTGGTCAGTCTATTGAACCAAAGAAAGTTGAAGTAGATTTTGATGAATCGAGTCCAAATACCTTACAAAAAGAGAACCCCGTGTTAGTAGAGAGTAGTGATCCTGAACAAATGGGTGAAACCCCTGAAGAGGCTGACAAGGTGCAAACAAATCTACCAGATGATCAATCTCAATGTCCTGACAATCAATATACAGATAAGGAGGTGGCAAAAGAAAGTGAGGAAGATAAGGAAATTGAAACCAAGACTATTGAAAAAGTATTGGTTGATGAATCAAATTTAGCTGATTTTGTTGGCAAGCCTGTCTTCCATGCTGACCGCATCTATGATCAGACACCTACTGGGGTTGTTATGGGTCTTGCCTGGACTGCAATGGGTGGCTCCACGCTGTATATAGAGACCACACTTATTGAGGAAGGGGAAGGAAAAGCNTCACTGCAGATCACTGGTCAACTGGGAGACGTGATGAAAGAAAGTGCTCAAATAGCTCACACGGTTGCCAGAGCAATACTACTGGAGAAAGAACCNGAAAACCCTTTCTTTGCAAATTCAAAGCTACACCTCCACGTTCCTGCAGGGGCCACACCAAAGGATGGACCCAGTGCTGGTTGCACGATGATCACTTCTCTGTTGTCCCTTGCCATGAAGAAGCCTGTGAAGAAGAATCTAGCAATGACTGGGGAAGTGACACTTACAGGGAAGATTCTTCCCATCGGCGGGGTTAAGGAGAAAACCATAGCCGCGAGAAGAAGTGAAGTTAAGACTATAATATTCCCTTCGGCTAACAGGAGAGATTTTGATGAGCTGGCACCTAATGTGAAAGAAGGTATTGATGTGCATTTTGTTGATGACTACATGCAGATCTTTGATTTGGCTTTTGGTGATGAGCAGTCTCCCAATACAGAGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	415864	424675	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0006515 misfolded or incompletely synthesized protein catabolic process

GO:0030163 protein catabolic process

molecular_function

GO:0004176 ATP-dependent peptidase activity

GO:0004252 serine-type endopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002970.1	PF02190.11	LON	96	305	8.00E-34
Glyur000034s00002970.1	PF00004.24	AAA	376	513	4.60E-21
Glyur000034s00002970.1	PF05362.8	Lon_C	685	889	8.10E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.252
SRR1783600	control	11.409
SRR1783602	moderate drought stress	13.332
SRR1811619	moderate drought stress	13.202

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.525
DRR006520	Root Summer glycyrrhizin high producing strain	12.602
DRR006521	Root Winter glycyrrhizin high producing strain	8.699
DRR006522	Root Winter glycyrrhizin high producing strain	8.560
DRR006523	Root Summer glycyrrhizin low producing strain	17.471
DRR006524	Root Summer glycyrrhizin low producing strain	17.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.386

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.968
SRR2868004	Drought Stress (root)	15.164
SRR2967015	Control (root)	13.250

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.720
SRR9715740	Leaf	9.359
SRR9715741	Leaf	5.127
SRR9715739	Root	1.626
SRR9715742	Root	14.135
SRR9715743	Root	11.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.351
SRR8749028	MeJA induced 9h	37.078
SRR8749029	MeJA induced 9h	31.795
SRR8749030	Uninduced	3.944
SRR8749031	Uninduced	3.205
SRR8749032	Uninduced	4.896

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.269
SRR8400027	Control - Root	17.609