Gene detail

Gene detail information of Glyur000034s00002965.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23380.1	3.00E-60	KNOTTED1-like homeobox gene 6
NR	AFK44130.1	2.74E-149	unknown [Lotus japonicus]
Swissprot	tr\|Q9FP29\|KNOS1_ORYSJ	1.00E-89	Homeobox protein knotted-1-like 1
trEMBL	tr\|I3SV38\|I3SV38_LOTJA	1.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:AFK44130.1}

Sequence

Transcript Sequence

>Glyur000034s00002965.1
GGTTCTCCACTAATATATATATTATGGTCTTCAAGTTAGAGCCTTATTGCTGCTTAAAGTTTGTTTTTGTGCATATATCTTTCTTTATGTGATAATAAACTTTTGACCCTGCTTTTTTTTTTGGGTCAAAAACCCTGCTTGTTTGACTGCTGCCTAGTACATATTATACCATATAAGTTGAGATTAAACCTCAGGCCCAGTTCAGTACTTGAGTTTCNGTCCAGCTAGCTAGCTAGTGATGGAAGATATTTTCAGGTTGAACCACCCTCTTGTACCTCGTCCAGAGGGTGTTGTTAGAAATGGCAAGGTTAACGTTTCTGATCATCAACTGCATCTAGGACTGGTGGCTNCTAATAATAACTACCTTCACATGGAGGAAGAGCCCGAGCCGGATGGAACCGGGTCGAATATTTCGGATCGGCTCATCAAGAACCAGATCGCCACTCACCCTCTTTACCCAAATCTAGTATCTGCTTATATAGNTTGCCAAAAGGTAGGAGCACCGACAGAAGTGACGTCACTCCTTGAAGANATAGGGCGTGAAAGCCACCCCACGGATGCTCTCCTTGAGATAGGAGATGATCCTGAGCTTGACGAATTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAACAGGAGTTGTCCAAGCCCTTCAATGAAGCCACCTTGTTTTTGTGTCATATCGAATCACAACTGAGCGACCTCTGTAAGGGGACAACAACAATCTCATCCGATAACAACATTAACAACCGCTCAGATGAGGCAGGTGGGGCTTCAGAGGATGAATTAAGTTGTGGAAAGGTTGAAGCAGTTGAAGGTGGTCATGATCGACCTTCTTCTGCAGGCACATGTAATCCAGGTGATCAAGAGCTCAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGAAAAACAATGATGGACTGGTGGAACGCCCACNATAGGTGGCCTTATCCTACGGAGGAGGAGAAATTGCAGCTATCAGAAATGACTGGGCTGGATATAAAGCAAATCAATAATTGGTTTATCAATCAGAGGAAGCGCCATTGGAAACCATCTGAAGACATGCGGTTTTCCATTATGGAGGGTGTAAGTGGCGGCGCCATAGGAGGAGGGCCTATGTAATTTTATTTTATTTTAGTTTTAAAAAATATAGAGGACCCGACCTATGTAATTTAATTAATCCTGCGTGATGATGTCTCAAAGTTTCCTGCTACTACTTCGTGTACCTTGTGCTAGATTGATGGGTACATTATACTGGGCGAGATATTAATTTTTTGGAATCGTCACCTAATTAAGTAGTAGGTCCATCAATTCAGCTTGTGTTAATGTATATGAGTGTTAAAAATTGTAAGCTAACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	401835	406872	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002965.1	PF03790.8	KNOX1	62	104	1.60E-18
Glyur000034s00002965.1	PF03791.8	KNOX2	110	159	1.10E-23
Glyur000034s00002965.1	PF03789.8	ELK	212	233	1.60E-09
Glyur000034s00002965.1	PF05920.6	Homeobox_KN	252	291	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.663
SRR1783600	control	6.751
SRR1783602	moderate drought stress	11.301
SRR1811619	moderate drought stress	10.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.845
DRR006520	Root Summer glycyrrhizin high producing strain	14.577
DRR006521	Root Winter glycyrrhizin high producing strain	17.440
DRR006522	Root Winter glycyrrhizin high producing strain	17.244
DRR006523	Root Summer glycyrrhizin low producing strain	28.788
DRR006524	Root Summer glycyrrhizin low producing strain	29.199
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.260
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.671
SRR2868004	Drought Stress (root)	11.417
SRR2967015	Control (root)	17.190

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.385
SRR9715740	Leaf	0.144
SRR9715741	Leaf	0.459
SRR9715739	Root	6.775
SRR9715742	Root	12.047
SRR9715743	Root	13.593

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.084
SRR8749028	MeJA induced 9h	21.613
SRR8749029	MeJA induced 9h	22.550
SRR8749030	Uninduced	13.147
SRR8749031	Uninduced	7.039
SRR8749032	Uninduced	8.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.630
SRR8400027	Control - Root	10.904