Gene detail

Gene detail information of Glyur000034s00002962

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74150.1	6.00E-50	Galactose oxidase/kelch repeat superfamily protein
NR	XP_004495646.1	0	PREDICTED: uncharacterized protein LOC101506949 [Cicer arietinum]
COG	YP_006448235.1	2.00E-22	hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799]
Swissprot	tr\|Q8RWD9\|ACBP5_ARATH	2.00E-36	Acyl-CoA-binding domain-containing protein 5
trEMBL	tr\|A0A072VNV6\|A0A072VNV6_MEDTR	0	Rab9 effector protein with kelch motif protein, putative {ECO:0000313\|EMBL:KEH43108.1}

Sequence

Transcript Sequence

>Glyur000034s00002962.1
TGAGAAAAGAGAGAGAGAAAAAAACACAGAGAGAAAAACTCACATGGGGTCTTTGGTTGCTGAAACTGGGAAGAAGAGAGCAATGTGGTTGTATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGGCACTCTGCNTGCATCTCTGGGGGTCTCATGTATGTCTTTGGGGGCTGTTGTGGGGGGTTGCATTTTAGCGATGTTCTGTGTTTGGACCTTGACAACATGGAGTGGAGCAANGTTGCTACCAAGGGTGAAAAGCCAGGTCCTAGAGATAGCCACAGTGCTGTTCTTGTNGGGCATAAAATGATAGTTTTTGGTGGTACAAATGGGTTCAAGAAGGTGAATGATACTCACATACTTGATCTCTTCACCAAAGAATGGGTTCGTCCTAAATGTGAAGGCAATCCTCCTCCTCCAAGAGAAAGTCACACTGCCACTCTTGTTGGTGATGAAAGACTAGTGGTTTTTGGNGGTAGTGGAGAAGGTGAAGCAAATTATTTAAATGATATGCATATTCTTGACCTTAGAACCATGAGATGGACCTCTCCTGAGGTCAAAGGTGACTTGCCTATCCCTAGAGACAGTCACAGCACTCTTGCAATTGGGAACAGGCTTATTGTGTATGGTGGAGATAGTGGTGATCAGTACCATGGTGATGTTAATTTGCTTGATATGGAAACAATGACTTGGTCAAGGCTGAAAAATCAAGGTTCTTCACCAGGGGTCAGGGCAGGTCATGCTGCAGTTTACATCATTGGAGGGGTTGGAGATAAACGTTATTGCAATGATATCTGGGTGTTTGACATATGCACTTGTTTGTGGACTCAACTTGATATACGTGGNCAACAGCCACAGGGGCGGTTTTCTCATACTGCTGTTGTTGTAGACACAGATATTGCCATATATGGCGGGTGTGGGGAAGATGAACGTCCTTTGAATGAATTTTTAGTATTGCAGCTCGGAGCAGAGCATCCAAAAGGACGTTACAACATGTCTGGGTGCAAAGTTTTTGGAACTTATTGGAATCAAGAAAAAANGACCATCCCGGGAGGAGCAGATACCAACATCAACTCGAAGAGGAGGAGAATTGCTGCTACAAAGGTGTGGGATGTTGATTCAGAACAAGAAGAACATTCTCTGTCACTGTCCCAGCATTCATCTCCATCTCAATCCGATCAAGAACAGACCCCAGGTCAAAAAGCGAATGCTTCCGTCATNGATTCCCAGCGGTATCATCATCGATTCAAACTGATCAACAAAATCCCAAGCACTTGCCAGCAGCATGACAATTTCTCAAGTAACGAGAGAGTTTTGAAGAACATGACACAAGTAAGTCAACAACAAGATCTTCATCTCCTCGAATATCAACCAAAACAAGAACAGTATATTCATATTGATGAAGATAGAAAAGGAGCTCGACAACACCAAGCTACAGAACAGAAGCCATTGGGGCGAGGACATGCACAACACCTGATTGGTGCTGAAGTTTGTGGGAAAATTGATGGAGCCTTTGATTCAGGTCTGCTGATGACAGCAGCTGTGAATGGAAGAATCTTTAGAGGAGTTTTATTTGCACCAGGAGCAGGAGTAGTCTCCAACAGTGTTGAGCCAAATTGTTCACCACCATGTTTGTTTCCCTCCACTCAAGTACCTCNCATGAACTCAAACCATGTGGATAATTTCAGGGATTCCCAGCATGTCACTACTTGCTCGCGTTCAGAGCCCTGCTATGGCTTAAGGCAGCCCCTACTGGCTCGACCATCTNCAATCATGAGAGGCACTACTGTGTCTTCTTTACCTGAAGAGCATAATAAAATAAGGAGTGATCTTCAAGGCTTGGTTTTGACACTTGGAGGACCTGCAAGTGGAAACCATGCTTGATTCCTGAGGTGAATTATTAGGAGGAGGATAATAAGGTTTTATGTAAATTATGGAAATAATCCTCTGTAGTTCAATGGCTATGCGTTTCTGTGATCAACCATAAGTTATGTAATATTTGGTTTTTTCTCTCCAGTATTCAGGAATATTTAGAGATCTTTATTTGATTTATGTATCTACGAGATGATTCCCTGCTAATGGNCAAAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	368975	373780	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002962.1	PF13415.1	Kelch_3	37	84	2.20E-09
Glyur000034s00002962.1	PF13418.1	Kelch_4	127	169	2.60E-09
Glyur000034s00002962.1	PF13418.1	Kelch_4	180	228	2.80E-07
Glyur000034s00002962.1	PF13415.1	Kelch_3	237	282	1.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.738
SRR1783600	control	24.362
SRR1783602	moderate drought stress	24.312
SRR1811619	moderate drought stress	24.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.606
DRR006520	Root Summer glycyrrhizin high producing strain	22.455
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	12.372
DRR006524	Root Summer glycyrrhizin low producing strain	12.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.305
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.233
SRR2868004	Drought Stress (root)	14.720
SRR2967015	Control (root)	15.600

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.369
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.091
SRR9715739	Root	8.289
SRR9715742	Root	28.872
SRR9715743	Root	22.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.916
SRR8749028	MeJA induced 9h	0.021
SRR8749029	MeJA induced 9h	0.181
SRR8749030	Uninduced	0.019
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.027

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.429
SRR8400027	Control - Root	33.282