Gene detail information of Glyur000034s00002956 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26800.1 | 2.00E-27 | |
| NR | KEH36905.1 | 8.64E-62 | IGR motif protein [Medicago truncatula] |
| trEMBL | tr|A0A072VFJ3|A0A072VFJ3_MEDTR | 3.00E-62 | IGR motif protein {ECO:0000313|EMBL:KEH36905.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 324054 | 326570 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002956.1 | PF09597.5 | IGR | 49 | 107 | 8.10E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.836 |
| SRR1783600 | control | 63.258 |
| SRR1783602 | moderate drought stress | 43.798 |
| SRR1811619 | moderate drought stress | 43.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.494 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.263 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.785 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.679 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.217 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.690 |
| SRR2868004 | Drought Stress (root) | 30.386 |
| SRR2967015 | Control (root) | 29.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.816 |
| SRR9715740 | Leaf | 18.585 |
| SRR9715741 | Leaf | 15.113 |
| SRR9715739 | Root | 15.488 |
| SRR9715742 | Root | 16.933 |
| SRR9715743 | Root | 14.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.055 |
| SRR8749028 | MeJA induced 9h | 41.818 |
| SRR8749029 | MeJA induced 9h | 79.423 |
| SRR8749030 | Uninduced | 29.260 |
| SRR8749031 | Uninduced | 21.944 |
| SRR8749032 | Uninduced | 21.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.806 |
| SRR8400027 | Control - Root | 41.075 |