Gene detail information of Glyur000034s00002954 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09280.1 | 0 | |
| NR | KEH43113.1 | 0 | phospholipase/carboxylesterase family protein [Medicago truncatula] |
| COG | YP_007984841.1 | 7.00E-40 | conserved protein of unknown function [Candidatus Saccharimonas aalborgensis] |
| Swissprot | tr|Q94AC1|STR6_ARATH | 0 | Rhodanese-like domain-containing protein 6 |
| trEMBL | tr|A0A072VNW1|A0A072VNW1_MEDTR | 0 | Phospholipase/carboxylesterase family protein {ECO:0000313|EMBL:KEH43113.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 315504 | 320148 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002954.1 | PF00581.15 | Rhodanese | 150 | 242 | 6.30E-06 |
| Glyur000034s00002954.1 | PF03959.8 | FSH1 | 364 | 601 | 2.70E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.680 |
| SRR1783600 | control | 9.618 |
| SRR1783602 | moderate drought stress | 11.383 |
| SRR1811619 | moderate drought stress | 11.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.966 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.678 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.567 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.668 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.092 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.832 |
| SRR2868004 | Drought Stress (root) | 6.887 |
| SRR2967015 | Control (root) | 6.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.616 |
| SRR9715740 | Leaf | 5.048 |
| SRR9715741 | Leaf | 4.134 |
| SRR9715739 | Root | 3.211 |
| SRR9715742 | Root | 6.412 |
| SRR9715743 | Root | 4.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.462 |
| SRR8749028 | MeJA induced 9h | 4.470 |
| SRR8749029 | MeJA induced 9h | 3.994 |
| SRR8749030 | Uninduced | 1.624 |
| SRR8749031 | Uninduced | 0.546 |
| SRR8749032 | Uninduced | 0.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.856 |
| SRR8400027 | Control - Root | 12.703 |