Gene detail information of Glyur000034s00002946.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56560.1 | 0 | Plant neutral invertase family protein |
| NR | XP_004495636.1 | 0 | PREDICTED: uncharacterized protein LOC101503498 [Cicer arietinum] |
| COG | YP_007093517.1 | 0 | alkaline and neutral invertase [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q9FXA8|INVA_ARATH | 0 | Alkaline/neutral invertase A, mitochondrial {ECO:0000305} (Precursor) |
| trEMBL | tr|I1NEX3|I1NEX3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G22780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 289793 | 293153 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH100 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002946.1 | PF12899.2 | Glyco_hydro_100 | 176 | 615 | 4.90E-218 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.672 |
| SRR1783600 | control | 7.455 |
| SRR1783602 | moderate drought stress | 7.369 |
| SRR1811619 | moderate drought stress | 7.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.580 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.013 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.796 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.061 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.445 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.904 |
| SRR2868004 | Drought Stress (root) | 15.287 |
| SRR2967015 | Control (root) | 14.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 44.726 |
| SRR9715740 | Leaf | 61.749 |
| SRR9715741 | Leaf | 39.675 |
| SRR9715739 | Root | 4.991 |
| SRR9715742 | Root | 10.880 |
| SRR9715743 | Root | 9.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.195 |
| SRR8749028 | MeJA induced 9h | 6.315 |
| SRR8749029 | MeJA induced 9h | 3.420 |
| SRR8749030 | Uninduced | 5.125 |
| SRR8749031 | Uninduced | 7.448 |
| SRR8749032 | Uninduced | 7.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.731 |
| SRR8400027 | Control - Root | 13.084 |