Gene detail

Gene detail information of Glyur000034s00002943

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G56600.1	2.00E-144	galactinol synthase 2
NR	ABF66656.1	0	galactinol synthase [Ammopiptanthus mongolicus]
COG	YP_004116387.1	3.00E-34	glycosyl transferase family protein [Pantoea sp. At-9b]
Swissprot	tr\|C7G304\|GOLS2_SOLLC	0	Galactinol synthase 2
trEMBL	tr\|A0EVX3\|A0EVX3_9FABA	0	Galactinol synthase {ECO:0000313\|EMBL:ABF66656.1}

Sequence

Transcript Sequence

>Glyur000034s00002943.1
CTTTTTCAACCAAACTTCCTTTGAATCACCAAACACTTTTTTTGAGAGAAACAATGGCCCCTGATATCACCACCACCGCTAGCGCTGCAGCCAACGCTCAAGCCAAGGGAGGCGCCGGTCGTGCCTTCGTGACGTTCCTTGCCGGTAACGGCGACTACGTGAAGGGTGTGGTTGGGTTGGCGAAAGGTCTCCGAAAGGCCAAAACGGTGTACCCTCTNGTGGTTGCAGTGTTGCCCGATGTTCCCGAGGAGCACCGGAAGATTCTCACCTCACAAGGCTGCATTGTTAGAGAGATTGAACCCGTTTACCCGCCCGAGAATCAGACCCAGTTTGCCATGGCATATTATGTCATCAACTACTCCAAGCTACGTATTTGGGAGTTTGTGGAGTACAGCAAGATGATATACCTAGACGGTGACATNCAAGTGTTTGAAAACATTGACCACCTGTTTGACCTGCCCAATAACTANTTCTACGCGGTGATGGACTGCTTCTGCGAGGCCACTTGGGGCCACACCCCACAGTATCAGATCGGTTACTGCCAGCAGTGCCCCGATAAGGTTCAGTGGCCCTCTGATTTTGGGCCCAAGCCCCCTCTGTATTTCAATGCTGGCATGTTCGTTTATGAGCCCAATCTCGCTACCTACCATGACCTCCTTCAAAAACTCCAAGTCACCAAGCCCACTTCCTTTGCTGAGCAGGATTTTCTGAACATGTACTTCAAGGACATGTATAAGCCTATACCCAATGTGTACAATCTGGTGCTGGCCATGCTGTGGCGTCACCCGGAGAATGTGGAGCTTGAGAAAGTGAAAGTGGTTCACTACTGTGCGGCTGGGTCGAAGCCTTGGAGGTACACTGGGAAGGAGGAGAACATGGAGAGAGAGGATATANAGATGCTGGTGAAGAAGTGGTGGGAGATATATGAGGATGAGAGTTTGGACGACTACTACAATCCCCTCAATCTGAATCGCTTCGCTACTGCGCTTTTGGAGGCTGGTGGTTTCAAGCTTCTCCGCGCCCCATCCGCTGCTTAATTAGTCTGCTTGATTTGCTTAATTATCATCTACCAGGATATGGATTGATTGATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	280073	281753	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18819	GOLS	EC:2.4.1.123	Galactose metabolism	map00052

Gene Ontology

biological_process
GO:0006012 galactose metabolic process

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047216 inositol 3-alpha-galactosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002943.1	PF01501.15	Glyco_transf_8	26	269	3.40E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.850
SRR1783600	control	0.906
SRR1783602	moderate drought stress	2.420
SRR1811619	moderate drought stress	2.114

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.396
DRR006520	Root Summer glycyrrhizin high producing strain	0.465
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	7.084
DRR006524	Root Summer glycyrrhizin low producing strain	6.859
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.420

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.435
SRR2868004	Drought Stress (root)	8.333
SRR2967015	Control (root)	42.113

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.397
SRR9715740	Leaf	37.318
SRR9715741	Leaf	37.370
SRR9715739	Root	44.313
SRR9715742	Root	51.162
SRR9715743	Root	43.355

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.329
SRR8749028	MeJA induced 9h	0.456
SRR8749029	MeJA induced 9h	0.362
SRR8749030	Uninduced	0.677
SRR8749031	Uninduced	0.035
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.581
SRR8400027	Control - Root	16.862