Gene detail

Gene detail information of Glyur000034s00002942

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02270.1	1.00E-141	non-intrinsic ABC protein 9
NR	XP_007145023.1	0	hypothetical protein PHAVU_007G203500g [Phaseolus vulgaris]
COG	YP_001505702.1	3.00E-21	ABC transporter-like protein [Frankia sp. EAN1pec]
Swissprot	tr\|Q9LZ98\|AB20I_ARATH	0	ABC transporter I family member 20
trEMBL	tr\|V7BGP2\|V7BGP2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17017.1}

Sequence

Transcript Sequence

>Glyur000034s00002942.1
TGAGGGCGAGTGTCTGAGACACAGCCACGCCTCTCCGACTTCTGAATCCTCACCAAATTTAATTCATATATGAAATGAATGAGTTTGTGGCACTGGCAAGCAGAGGCAGAAAGAAGAGTGTGTGTTAGGTTTTGGCGTTGAACGTTGAGAATGGGTGTGAATGGGAATTCAGATTCAAAGGCAGCAAGAGCAACGGTTGAGATTAAAGAGCTGAGATTCACTTACCCTGGCATCGACGGCCATCCTCCGCCGGGTTCCACCCCTCTCATTCAGGACTTCTCCCTCACCCTCAATTCCGGCGATCGCTGCCTTCTTGTCGGATCCAATGGCGCTGGAAAGACCACCATTCTCAAGATATTAGGAGGGAAGCACATGGTGGAGCNTGATATGGTTCGTGTGCTCGGAAGATCAGCTTTCCATGACACCACGTTAACATCTTCCGGTGATCTCTGTTACCTTGGTGGTGAGTGGAGGCGAGATGTTGCTTTTGCGGGTTTTGAGGTTCCAATACAAATGGACGTTTCTGCTGAAAAAATGATATTTGGTGTGGGTGGGATTGACCCTGAAAGAAGAGCAGAGCTGATCAAGGTATTAGATATCAATCTTTCCTGGAGATTGCATAAAGTATCTGATGGTCAAAGAAGAAGAGTGCAAATTTGTATGGGTCTCCTCAAACCATTCAAGGTTCTTCTTCTGGATGAGATAACAGTTGACCTTGATGTTCTAGCGAGAGCTGACCTTCTGNGGTTTCTAAGAAAGGAATGTGAAGAGAGGGGAGCCACTATTATATATGCAACACATATATTTGACGGTCTCGATGATTGGCCAACAAATATTGTTTATGTGGCTCATGGAAAGCTGCAACTAGCTATGCCCATTGACAAAGTCAAAGAAATTAGCAAACTNTCACTAATGAGAACAGTAGAGAGTTGGCTGCGGAAAGAACGAGACCAAGATAGAAGAAAAAGGAAAGAAAGGAAAGCNGGTGGCCTTGCTGAATTTGAAAAGCAAGTTGAGGGGAGCCGTGTAACTGGGGATCCAGCACGAGCTGCGGTTCGAGTTATCAATAATGGCTGGGCTGCAGGCCGATTACATTCCACCNTTGCTGGTGAGGAAAACTTCCACTTGAGCTCAAACCGGGTATTGAGGCAGTAGATAAATTTCAAATTCTTTGAGCGCCTTTGCTGTATAATTTTATGAACTTAAAATAAAATTTGTTTGCCAATGCTTTCTGGCATATAGATTCATTTGTTATGTAGAAAGGATCACAGGGTATANAGATACAATAAAGTTAATGTATCTAACCACGACAGTTTACAATGCTTGCTGGAAAGTGTTTTGTAATCTGTATTTGGGCACAAATAGAGCAATAGCAGCCTTTGTAAAATTCTCTCAAAAAGTTCTCTGCTATCAGTATCTTTGGCTCGAAGTCTCGGTCTTACAAAGCCAAATGGTTCAAGCCCAAATTGTTCAGCTGATGGGTGTCATTTGAGTACCACTCACGACGAATATGAGATGCTGAGTCATACTAGCTGAGTCATGTCTTTTTCTGTTTTTGTTATTTCTTTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	274563	277684	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002942.1	PF00005.22	ABC_tran	41	186	7.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.400
SRR1783600	control	11.926
SRR1783602	moderate drought stress	9.967
SRR1811619	moderate drought stress	10.196

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.286
DRR006520	Root Summer glycyrrhizin high producing strain	16.443
DRR006521	Root Winter glycyrrhizin high producing strain	11.828
DRR006522	Root Winter glycyrrhizin high producing strain	11.799
DRR006523	Root Summer glycyrrhizin low producing strain	13.273
DRR006524	Root Summer glycyrrhizin low producing strain	12.546
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.743
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.534
SRR2868004	Drought Stress (root)	22.945
SRR2967015	Control (root)	24.966

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.579
SRR9715740	Leaf	50.087
SRR9715741	Leaf	29.181
SRR9715739	Root	7.773
SRR9715742	Root	11.446
SRR9715743	Root	10.584

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.547
SRR8749028	MeJA induced 9h	12.908
SRR8749029	MeJA induced 9h	12.458
SRR8749030	Uninduced	10.525
SRR8749031	Uninduced	10.425
SRR8749032	Uninduced	6.425

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.955
SRR8400027	Control - Root	26.313