Gene detail information of Glyur000034s00002932.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26749.1 | 5.00E-20 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_007145029.1 | 1.28E-52 | hypothetical protein PHAVU_007G203900g [Phaseolus vulgaris] |
| Swissprot | tr|Q0JP11|C3H3_ORYSJ | 3.00E-34 | Zinc finger CCCH domain-containing protein 3 |
| trEMBL | tr|V7BJ32|V7BJ32_PHAVU | 5.00E-53 | Uncharacterized protein {ECO:0000313|EMBL:ESW17023.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 236217 | 237642 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002932.1 | PF06220.7 | zf-U1 | 5 | 39 | 3.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.096 |
| SRR1783600 | control | 55.055 |
| SRR1783602 | moderate drought stress | 51.259 |
| SRR1811619 | moderate drought stress | 50.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.164 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.731 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.080 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.973 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.918 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.065 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.878 |
| SRR2868004 | Drought Stress (root) | 19.222 |
| SRR2967015 | Control (root) | 20.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.021 |
| SRR9715740 | Leaf | 14.833 |
| SRR9715741 | Leaf | 11.418 |
| SRR9715739 | Root | 16.525 |
| SRR9715742 | Root | 9.131 |
| SRR9715743 | Root | 7.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.446 |
| SRR8749028 | MeJA induced 9h | 30.160 |
| SRR8749029 | MeJA induced 9h | 45.291 |
| SRR8749030 | Uninduced | 22.416 |
| SRR8749031 | Uninduced | 28.781 |
| SRR8749032 | Uninduced | 30.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.723 |
| SRR8400027 | Control - Root | 32.786 |