Gene detail

Gene detail information of Glyur000034s00002931.4

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26751.1	0	shaggy-related kinase 11
NR	XP_004495628.1	0	PREDICTED: glycogen synthase kinase-3 homolog MsK-1-like isoform X4 [Cicer arietinum]
COG	YP_008149401.1	9.00E-25	hypothetical protein SCE1572_14835 [Sorangium cellulosum So0157-2]
Swissprot	tr\|P51137\|MSK1_MEDSA	0	Glycogen synthase kinase-3 homolog MsK-1
trEMBL	tr\|V7BHM7\|V7BHM7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17025.1}

Sequence

Transcript Sequence

>Glyur000034s00002931.4
GTATTGGTATGTATGGATCTAACTCTCCCATCATTTCAAGCGCCGTTTTACCCCAACTCGCTTCTTTCATTTTCCTACCAAACAGTAGATGAGTGGTTTTTGAACAGTTAAAAAGAGAAAGGGATTCAGTGGAGATGGCGTCGGTTGGTGTGGCACCAACTTCAGGTTTGAGAGAGACCAGTGGTCATGCTGCAGCAGGTGTTGATAGATTGCCAGAGGAAATGAACGATATGAAAATTAGGGATGATAGGGAAATGGAAGCCACAGTTGTTGATGGGAATGGAACGGAGACTGGACATATCATCGTGACTACCATTGGGGGTAGAAATGGGCAGCCGAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAACTGCAAACAATGCGCCTTCTTGACCACCCAAATGTCGTCTCTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTACATCGTGTGATCAAACATTACAACAAGTTGAACCAAAGGATGCCGCTGATTTATGTTAAGCTCTATACATACCAGATCTTTAGGGCATTATCTTACATTCACCGTTGTATTGGAGTCTGCCATAGGGATATCAAGCCTCAAAATCTGTTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTCGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCAAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACAACAGCTATTGACATCTGGTCTGTTGGTTGTGTTTTGGCTGAACTGCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTTTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCACAAATTAAAGCGCATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTGGATTTGGTATCAAGACTGTTGCAATACTCCCCAAATCTGCGGTGCCAAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGACCCAAACACTCGCTTGCCAACTGGTCGTTTCCTTCCACCACTATTTAATTTCAAACCACATGAACTGAAAGGAGTCCCAGTCGAGATTTTGGTGAAATTGGTTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTAATATGTCGTGAATGAAATGTAACAAAACTGCAAGTGTTGTTTCCATATGAATGCTACGCGTTCATTCTATTTGATGATATGATATTTGTTAGTATCTTTGTTGTACTCGGTTTCCCTGTGAAAGAAGATTTAGAGATATATGCTGCCCATTATTACCCAACCNTCGATGGGTATTCAGAATACCCCGTTTCCCTGTATNACAGCAGATTGTAACATGCAATAGGAGACAAATGTCTGCAATTATCTAAGTGTTGTATCAGTATTTGTATTTGTTGAGACAATGACGGGTTGTTGGCTTAATTTAGTTATGCTTAGCATGGTAGTTGGAAGTTGTAATGGCCTTATCTGTCTGTGTGTTTATTTTTCCCTCCTTTGTGTCAGGGTTGTCTCTGTCGTTTTGACATAGGACTAAGTCTCGGTGATTTGTCTTGAATATTGCTCTATTAAGAAATATTAAACTCCATATATGGAAGTGATTGCTCTTAGTTTAATCAAACAATCAAGGATGACTTGTGTGTTGTGTTGTTTTCTTTTTTGGTGGTTTGGAATTGAGTGAACTTGTGTCACTACTGTGCACTGTTGAAAAACTTGGGATAGCAGATCTCACCTTGTCCGACAGGTAATTGCCATTTCTACCAAAAGAAAAAAAGTTGGCAAATTGGGGTAGGGATCATGTCTTGTCTTGCATGGTCTGCACATTGCTTGTCNTCGTGGCTATAGCACCGTCCACTTTGTTGACTTTGGCTGTTTGGATGATCATTCGAGTGCCTCTTTGGTCAAAAAGAGATAATGGCCTTGGTCTAAAGGAAAAATGCGTTGGAATTGCACTTCCCTTGAAGGCAAATCAGCCGTGGATTCAAGCATGGGTTTTCTTTAGTTATTAGTAGCCTAAAGACTTTTTGTTATTCCTGCTTTTATTTCTGACTTGTTTCTTTTAGACACGGCTCTTCTATTTCGCCAGGAAGTAGAAAGAGCGGTTAATAGATGTTTCCTGTTGTTTCCCCTTTTTTGTCGTTGATATTTCCTGCTGTTACTTTTGGACTCTGTAATCTGCATTAACGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	230226	235059	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002931.4	PF00069.20	Pkinase	77	358	1.10E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	160.564
SRR1783600	control	162.754
SRR1783602	moderate drought stress	177.306
SRR1811619	moderate drought stress	177.449

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	145.752
DRR006520	Root Summer glycyrrhizin high producing strain	135.939
DRR006521	Root Winter glycyrrhizin high producing strain	157.494
DRR006522	Root Winter glycyrrhizin high producing strain	159.018
DRR006523	Root Summer glycyrrhizin low producing strain	214.330
DRR006524	Root Summer glycyrrhizin low producing strain	223.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	126.409
DRR006526	Leaf Summer glycyrrhizin high producing strain	125.217

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	201.980
SRR2868004	Drought Stress (root)	217.449
SRR2967015	Control (root)	192.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	151.959
SRR9715740	Leaf	182.568
SRR9715741	Leaf	211.213
SRR9715739	Root	73.939
SRR9715742	Root	122.263
SRR9715743	Root	116.516

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	178.844
SRR8749028	MeJA induced 9h	155.003
SRR8749029	MeJA induced 9h	167.435
SRR8749030	Uninduced	187.983
SRR8749031	Uninduced	211.422
SRR8749032	Uninduced	181.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	173.072
SRR8400027	Control - Root	152.194