Gene detail

Gene detail information of Glyur000034s00002925.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09460.1	1.00E-37	Carbohydrate-binding X8 domain superfamily protein
NR	AES61493.2	0	carbohydrate-binding X8 domain protein [Medicago truncatula]
Swissprot	tr\|O65399\|E131_ARATH	1.00E-26	Glucan endo-1,3-beta-glucosidase 1 (Precursor)
trEMBL	tr\|G7IAB2\|G7IAB2_MEDTR	0	Carbohydrate-binding X8 domain protein {ECO:0000313\|EMBL:AES61493.2}

Sequence

Transcript Sequence

>Glyur000034s00002925.1
ATGGCCAAGGAAGCTTCTTTGTGCCTCTTGTTTCTCTCTTCTCTCTTAATCTCCTGTTCTGGAACTCTGGTGGGTTTTTCCTATCATGAGAGAGGAGAAAACACTTGGACTTCAACATCCGCTGAAAAAACCATATCATTCCTCCAGCAAAGCAAGGTTTCTTCATCTCAGATTCGAGTTTTCGTCAGAGATCATAGGATCTTGAGCACCCTGACCAACTCCAACGTGTCGGTTGATCTCTACTTGAACAAAAGCCAAGTTGAAAAATTCACTACTTCTTCAGAACTAAAAGCTCACCTGGTGAACTTACTTCCACAGTTAGACATCAAAAGCATAATTGCTAGCTGTGGCAGTGAGTGCTTAGCACAAAATGAGATTCCTCTGCTCATTCATTCTCTGAGATCAATTCATTCAACTCTCAGCAATATTCTTCACGTGGGAAGGGAAGTAAAAGTTTCAGTAGCATTTCCACTTCCATTATTACAGAAGCTGAATGCATCATCACATGAACACGATGATATTCGTAAGATGCTTTCATTTCTAAAGGAAATGAAATCGTTTGTGGTGATAGAAGACAGCATTGATGGAGAATATTTAAGCATGGGGGATCANTTTGTTCAGTCTGTTATCAAACGAGCTACACTTGCTGCTTCTATTCTTCCTTGCAAAGATGTTCCATTGGTTCTAACANTCAAAAGCCCAATCATCCCCAGTTCAATGGAAGTAGCTCAATCTAGCAAGAGGGTATCCAAATATCTAGAACCAATAACTCCTATTACAAAAAGGATAGCTGCATTATATGTAGAAGTGTACACAACAGAAGATCTTGCACAGAAAGATCAGCTCAAAAGTGAAGAANAGGGAGAGTTTTTTCCTTTGTCCCGTAGAGAGATCCTAAGCAAGATCCACAGAAGAAGAACTCTAGGTGACATAAACAGCCCAACAAACACAGTTTTCCCCACGAATCCAACACCAACCATCACACCCCCAGAAGATACACCAACCATCATCACAGTTCCTTCCACCACCAATCCTGTTACAATTTCCCCCTCCAATCCGGCTGCAATGCCTGTAACAGTTCCTTCTGCCACACCTGTGCCTGTACCTCCCACAAATCCAGCAGTTACAAATCCAGCTACAACTCCCCCAACAGTTCCAGGTTCACAACAACCAGTGACATCTTATCCACCACCTCCATCACCTCCATCAGGAAATGTTCCTGTTCCTGTCACGAACCCCCAACCTCAACCTCCTCCTCCTTCAAACACAAATAATGCTCCTGCCAGTCAGGGGCAGAGTTGGTGTGTGGCGAAGACCGGAGCTCCTCAAGCTTCACTTCAAGCAGCACTGGACTATGCTTGTGGAATGGGNGGTGCAGACTGTTCTCAGATTCAGCAGGGTGGGAGTTGTTACAGCCCGGTTACTTTGCAAAACCATGCTTCTTTTGCCTTCAACAGCTACTATCAAAAGCATCCAGCACCAACAAGCTGTGACTTTGGAGGGGCTGCCACCTTAGTCAACACAAACCCAAGCACCGGTTCTTGCATTTTCCCATCATCATTGTCGTCATCGTCGTCATCATCAACGCCAATGACACCATCCCCAACACCACCTACNTCATCTACCCCAACACCACCTACACAGTCAATCACAACACCACCACCAAGTCCAACAACACCTCCACCATCAATGCCNACAGCTCCACCAAAATCTTCAGGAGCAGGCACAGGCACTTTTGGCTATGGTACCCCACCTTCAGTATTGAATTCAAGCAGCAACCCAGCCTCGTCAGGTGGTATAATGCCAGGTTTTGGGTCCGACACCCCTCCTGTTGTAAATACCACGTCAGCCTCCCACTCTGTGCCTCTGAAACCTTTTACCGGCTGCATAGTCCTCATGATGGTTTCATTTGTCACTGCAAGACTCAGTATGCACCCATAGAGTTCAGCATTNGGAAACAAGTTTTCCTTCCATTCCATCCGGATCATGCCATGTTCTGCTGTAACATTACATGCAGATGGAGTGGAATTTTCAATATGGAAATAACTGCTACTTGTTTATGGTTTCTAGGCTGTACAACAGATTATNGTCGATCGACATTGGTCATGTACATATGTTTCGAGAGCTTAAGTAGTTTTTTTATTAGGTGCAGAGCTTTGGTAGTTTTTTTTTTAACCTTGGACGATGTAGTTCAATGTAAATTGGTCAGAGTTGTTTTGGCAATCGGTTTGCATGATTTATGAGAGGCTGTCAAGGTTTAGAAAGACGGATAAAAATTGTGTCACGGTTCATGCGTAACGCAAGCTTATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	204861	207718	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002925.1	PF07983.8	X8	434	504	2.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	121.721
SRR1783600	control	122.523
SRR1783602	moderate drought stress	132.382
SRR1811619	moderate drought stress	132.787

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	94.621
DRR006520	Root Summer glycyrrhizin high producing strain	92.623
DRR006521	Root Winter glycyrrhizin high producing strain	28.146
DRR006522	Root Winter glycyrrhizin high producing strain	27.382
DRR006523	Root Summer glycyrrhizin low producing strain	67.047
DRR006524	Root Summer glycyrrhizin low producing strain	65.771
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.722

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.684
SRR2868004	Drought Stress (root)	42.762
SRR2967015	Control (root)	57.968

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.962
SRR9715740	Leaf	2.745
SRR9715741	Leaf	3.137
SRR9715739	Root	23.985
SRR9715742	Root	42.699
SRR9715743	Root	36.006

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.409
SRR8749028	MeJA induced 9h	1.160
SRR8749029	MeJA induced 9h	1.693
SRR8749030	Uninduced	0.208
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	0.406

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	94.571
SRR8400027	Control - Root	99.272