Gene detail

Gene detail information of Glyur000034s00002922

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53700.1	2.00E-49	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004495618.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LFF1\|PP281_ARATH	9.00E-53	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic (Precursor)
trEMBL	tr\|K7N2H0\|K7N2H0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G22410.2}

Sequence

Transcript Sequence

>Glyur000034s00002922.1
ATGCTTGGTTCTATGGCAATAAAGCTCCCATCTTTGGCACATCCTAGCCGATTCCTCAAATGGGTTTATCTAACTTCAAGCAGTATTGAAGAAATTTCAGAGACCATTGGAATTGTAAAGCCCAAAGATTCATCTGAATTCGATCAAAACATTAACCTTTTGAGGAATAAGCTTGCCCCAGATAACTTAATCAAGGTTTTGAACCGTACCAGCGATTTGAACTCAGCGGTGAAGATATTCAAATGGGCTTCTCGCCAGAAGAGTTTCCACCACACCTCCAATACATATTTTGAGATCATTTTGAAACTGGGTATGGCTGGGAATGTTCTGCAGATGGGGGATTTTTGTCAGAACATGGTGAGGGAAAGATGCTTAGGTGCTGAAGAAGCTCTTTTAGCATTGGTTCATGCATTTGTTCAGCATTGTAGAATTAAAGAAGCGATTACAGTCTTAGTGAACATGAATTTGGGTGGTTATAAGCCCCCAATTGAGGTATTTAATGCTTTATTGGGTGCTCTTGTGCAAGGAGAAAGTAGAGATTTTCAAAATGCCTTGTTTGTTTATAAAGAGATGGTGAAGGCTGGAATCCTTCCCACTGTCCACACTTTGAATTATTTGTTGGAGGTATTGTTCACCACCGATCGGGTTGACCTGGCTTTGGATCAATTTAGAAGAATGAACAACAAAGGATGTAGTCCAAATAGTAAGACCTTTGAGATACTTGTAAAGGGTCTCGCTGAAAATGGTCGAGTGGATGAAGCTGTTGCTGTTTTAGAGCTAATGCTCAAACTCAAATGTGAACCAGATTTGAGTTTTTATACCTGCACCATACCTCTCTTTTGCAGGGAAAATAAATCAGAGGAGGCAATGANGTTGTTTAAAATGTTAAAAGATTCTGATTTTGTGCCAGATTCTTTCATTTATGGGGTTCTAATACAGTGCTTGTGCAAAAACTTGCAGTTGGATTCCGCTTTATGCCTCATAAATGAGATGATTGGAAGTGGTATACCACCAAAACATGATGTTTTTGTTGATATGATAAATTGCTTTTGTGAATTAGGGAAATTAGACGATGCTATAATGTTTTTAGAAGATAAGCAAGTTCATGAAGCTGCTCCTTTCAACNCATTGCTTGAACGTTGCTGCAATGCTGGTAAAATTCTGGTAGCAAATGTTCTGCTGGAGACAATGTCTGAGAGAAACATTGCTGATTGTCAATCTTGGAATATTCTCATTAGATGGCTTTGTGAGAATGAAGAGACCGAGAAAGCATATATACTTCTCGGCAGAATGATCAAATCCTTAGTTATTCCTGACCATACGACATATTNTGCTCTTATAGTTGGCAACTGTAGATTGACTAAGCATGATGAAGCAATGGAACTATTTCATCGAATTTGTGCCAGATGCTGGCATTTAGATTTTGCCGCTTATTCTGAACTAGTTGATGGCCTCTGTGACATCAAACATTCTCAATATGCCATGGAAGTGTTTTGCTATATGTCAATGAAGAGATGCTCTCTTCATTCCTTCTCCTTCTACAAGTTGACAAAATGTGTATGTGACTCAGGGCAGGTCAACAAAGCCATAAGACTATGGCAATTAGCTTATTATTGTGGTATTTCTTGCTGTATTGCCACGCACACTATTATCATGCATGAGTTGTCTAAATCAGTTCAGGCAAAAAATCTGTTAGCATTCCTCTCACAGATGCTGATAGTGGGAAGCAATCTTGACGTGGAAGCATATTGTATCCTTATTCATAGCATGATTAAACAAAATCTAGTGAAGGAATGTGTTTTATTTTTCAATAGGATGGTCAATGAAGGTCTAATACCTGATCCAGACAGACTATTTGATCAACTGTCATTCATAGCCAACCATTCTCAGTTATCTATGATCTCTAGTGCAATTGAAAAAATTTCTGACAGTGAAAATTTGAGTTCAGCAATATATAGCTTACTGATAACTGGCCTGTGGAAAGAGGGTAAGGAACATGATGCCCGGCGATTACTTGATTTGATGTTAAAAAAGGGTTGGCTTCCGGATACAACCACTCATAAGTTGTTGATTGGATATGATGTTAGAGAAGGAAGGAGTCAAGCAATATTGTTTGATGATAATTCTACCTCTCATGATTCTGTTAGCAATATACTTGCAGAAGGCCTTGGAGATTCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	191316	193496	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002922.1	PF13041.1	PPR_2	198	246	2.50E-09
Glyur000034s00002922.1	PF01535.15	PPR	273	300	0.078
Glyur000034s00002922.1	PF13041.1	PPR_2	303	352	3.10E-08
Glyur000034s00002922.1	PF13041.1	PPR_2	407	452	8.10E-09
Glyur000034s00002922.1	PF01535.15	PPR	582	611	0.022
Glyur000034s00002922.1	PF01535.15	PPR	651	679	0.0036

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.400
SRR1783600	control	1.360
SRR1783602	moderate drought stress	1.932
SRR1811619	moderate drought stress	1.671

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.959
DRR006520	Root Summer glycyrrhizin high producing strain	1.913
DRR006521	Root Winter glycyrrhizin high producing strain	2.555
DRR006522	Root Winter glycyrrhizin high producing strain	2.417
DRR006523	Root Summer glycyrrhizin low producing strain	1.357
DRR006524	Root Summer glycyrrhizin low producing strain	1.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.630
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.829
SRR2868004	Drought Stress (root)	3.453
SRR2967015	Control (root)	3.431

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.358
SRR9715740	Leaf	0.960
SRR9715741	Leaf	1.325
SRR9715739	Root	0.272
SRR9715742	Root	0.810
SRR9715743	Root	0.752

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.657
SRR8749028	MeJA induced 9h	1.201
SRR8749029	MeJA induced 9h	0.208
SRR8749030	Uninduced	0.903
SRR8749031	Uninduced	0.842
SRR8749032	Uninduced	0.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.394
SRR8400027	Control - Root	2.865