Gene detail

Gene detail information of Glyur000034s00002919

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26600.2	5.00E-138	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	KEH43128.1	0	isopenicillin N epimerase-like protein [Medicago truncatula]
COG	YP_007101293.1	1.00E-46	Isopenicillin-N epimerase [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q9M1R1\|LCYD1_ARATH	5.00E-156	L-cysteine desulfhydrase
trEMBL	tr\|A0A072VNX6\|A0A072VNX6_MEDTR	0	Isopenicillin N epimerase-like protein {ECO:0000313\|EMBL:KEH43128.1}

Sequence

Transcript Sequence

>Glyur000034s00002919.1
ATGGCCTTCAACGACCACGATGATCACAATCACCTAAACGGTGACGACGTCGTTTCGAAGAAACCGAAGCTGCTGTGTTCTACCCCTTCAACCATCACCGACGAGGAGATTCAATCGGAATTCAGCCACCACGACCCGAACGTGGCTCGCCTCAACAACGGTGCCTTCGGGTGCTGCCCCGCCTCCGTCATCGCCGCCCAGCGCCAATGGCAGCTCAAGTTCCTCCGGCAACCCGACCACTTCTACTTCAACGAACTCAAGAAGGGGATCCTCCNCTCCCGAACCATCATCAAGGAACTCGTCAACGCCAACCACGTCGACGAGATCTCCATCGTCGACAACGCCTCCACCGCCACCGCCATCGTCCTCCAGCAAGCCGCATGGGCCTTCCACGANGGGAAATTCATCCCTGGAGACGCCGTCGTCATGCTCCACTACGCCTACGGCTCCGTCAAGAAAGCCATCGAGGCCTACGTGGCACGCGCCGGAGGCAGAGTCATCGAGGTCCCNCTTCAGTTCCCCGTCACCTCCGGAAACGACGTCGTCACGGAGTTCCGCCGCGCGCTGGAGAGAGGAAAGAGCAACAACGGTTGCAACAGAGTTAGATTAGCGGTTATCGATCACGTGACTTCCATGCCGAGCGTGGTGATTCCCGTGAGGGAGTTAGTTAAGATTTGCAGGGAGGAAGGGGTTGATCAGGTTTTCGTAGACGCGGCACACGCGATTGGGTGCACGCGCGTTGACATGCAGGAGATTGGGGCTGATTTCTACACCAGCAATCTGCACAAGTGGTTCTTTTGTCCTCCTTCCGTTGCTTTTCTCTACAGTCGTCGAAGGTCGCGTGGCTCTGCTGATTTGCACCACCCCGTGGTGTCTCACGAGTACGGGAATGGGTTGGCGGTGGAGAGTTCTTCGGTTGGGAATAGGGATTACAGTGCACAGTTGGTGGTTCCTGCGGTTATGGAATTCGTTGAAAGGTTCGAAGGGGGTATTGAGGGAATCAGGAAGAGGAATCANGATGCGGTTGTTGAGATGGGTGAGATGCTTGTGGCGGCTTGGGGGACCCACCCACCTTGGGACTCCTCCTCACATGAGTGCCAGCATGGTGATGGTGGGTTTGCCTCCTTCACTGGGGATTGGGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	178719	179864	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002919.1	PF00266.14	Aminotran_5	60	283	5.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.043
SRR1783600	control	5.126
SRR1783602	moderate drought stress	5.125
SRR1811619	moderate drought stress	4.962

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.681
DRR006520	Root Summer glycyrrhizin high producing strain	3.542
DRR006521	Root Winter glycyrrhizin high producing strain	6.032
DRR006522	Root Winter glycyrrhizin high producing strain	6.057
DRR006523	Root Summer glycyrrhizin low producing strain	4.909
DRR006524	Root Summer glycyrrhizin low producing strain	4.942
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.830

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.983
SRR2868004	Drought Stress (root)	14.119
SRR2967015	Control (root)	17.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.652
SRR9715740	Leaf	0.891
SRR9715741	Leaf	0.505
SRR9715739	Root	7.347
SRR9715742	Root	3.778
SRR9715743	Root	4.566

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.498
SRR8749028	MeJA induced 9h	0.377
SRR8749029	MeJA induced 9h	0.595
SRR8749030	Uninduced	0.290
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.231
SRR8400027	Control - Root	5.175