Gene detail

Gene detail information of Glyur000034s00002904

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09540.1	3.00E-76	myb domain protein 61
NR	XP_007145057.1	1.94E-180	hypothetical protein PHAVU_007G206200g [Phaseolus vulgaris]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	2.00E-86	Transcription factor MYB86
trEMBL	tr\|V7BKF7\|V7BKF7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17051.1}

Sequence

Transcript Sequence

>Glyur000034s00002904.1
ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGTTACGGAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTCTGAATTACATCACCAAACATGGTCACGGATGTTGGAGCTCCGTCCCCAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTACTTAAGGCCTGATCTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAATTTGATCATTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACAGACAATGAGATTAAGAACCTATGGAATTCCTGTCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAGCACCCACAAACCACTCTCTGAGGTTGANAATGACAACAAGGACAAGCTGCCATCCACAGCTGACAAAAACAACCAGAAAGCCTCAGTGGGATCCAATAATGAAGTAGTGATGAGTTGTTTGGTTGAGCCAGCAAAAGTACCCATGCCTGCAGAGGGACCATACCCTCTGGAAGTTTCCAGGATCAACAATAACAGCAACAGTAGCAGTAATTTGACCAGCACAAACACACAGGAATTATTCCTAGATAGGTTTGGTGGTACCTGCCATGACAGCTCCATCAGTACCAGTTGCAGGCCATCTGATATGGCAGGATATTTTTCCTTCCAACACTTGAACAACTATGGACAAAACATGGGTCTCTCTGCAAATCCCAGCTCCTCTCTTTGTTTCACAGCACCAACCTCTACTATGTCAGACCCCAATTCTGGCATAACCTCAACCATGCTCCATTCTGTGTCTACCTCAATTTTCCCAACTACTCCAACACATCATGTAAAGCCAACTGTTTCCATTTCCTCTGGCGATATTGATCATGGGGTTCACAACTGGGAATCCAGTAACTTCAGTATCAGTAACAGTAACAACACAAACAAAAGCAATAATGGGAGCAGTGCCAACAACACAAACTTCCTTGACAGCAGCACTCTAACGTGGGGGCTGACAGAGTCTGTGAAGGTTAACAAAGATGCTCATCAAGCAGAACAAGAAGAGATGAAATGGTCTGAGTATCTTAACTCAACCCCGTTTCTTCTGGGAAACACAGTGCTGCAGAATCAAACCTCTCAATCTGTATACAGTACTGAGGTTAAACCAGAAACAGGCTTCATAACAGATGAGTCATGTACTGGTTCTGGTGGTTGGCACCACCATAGCCAGCAGCAGCACCTACCAGCTTTTCAGCTTTCAGATATATATACCAAGGATCTGCAAAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	60564	62183	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002904.1	PF00249.26	Myb_DNA-binding	14	61	6.30E-16
Glyur000034s00002904.1	PF00249.26	Myb_DNA-binding	67	110	9.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.000
SRR1783600	control	0.935
SRR1783602	moderate drought stress	0.527
SRR1811619	moderate drought stress	0.624

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.054
DRR006520	Root Summer glycyrrhizin high producing strain	0.947
DRR006521	Root Winter glycyrrhizin high producing strain	0.162
DRR006522	Root Winter glycyrrhizin high producing strain	0.082
DRR006523	Root Summer glycyrrhizin low producing strain	1.324
DRR006524	Root Summer glycyrrhizin low producing strain	1.325
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.347
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.755
SRR2868004	Drought Stress (root)	14.906
SRR2967015	Control (root)	14.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.147
SRR9715739	Root	0.000
SRR9715742	Root	1.380
SRR9715743	Root	1.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.010
SRR8749029	MeJA induced 9h	0.085
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.932
SRR8400027	Control - Root	5.749