Gene detail

Gene detail information of Glyur000034s00002899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59740.1	5.00E-85	Major facilitator superfamily protein
NR	XP_004495820.1	0	PREDICTED: nitrate transporter 1.2-like [Cicer arietinum]
COG	YP_001972967.1	4.00E-08	peptide transport protein [Stenotrophomonas maltophilia K279a]
Swissprot	tr\|Q93VV5\|PTR16_ARATH	2.00E-105	Protein NRT1/ PTR FAMILY 4.3
trEMBL	tr\|G7IAD6\|G7IAD6_MEDTR	0	Peptide/nitrate transporter {ECO:0000313\|EMBL:AES61517.1}

Sequence

Transcript Sequence

>Glyur000034s00002899.1
GTTTTCTCGTCTGGTGTTTGGAAGTGCTAAACCGGTGAGCACAGAGAACAAGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGATAAATAGCACAGAGGACAGAACAGAAGCAAACAGTTTATAAGGCATTAAACTCTTGTGGATTTGTATGTTCAAAGCCACTCTCATTACCATTGTGGTCTGAAGTAAAGCTTTTCTCAAAAGCACTTCCATTTTGGGTTATATGTTCACCAACAACACCATCTCCTCTTAACTGCCCATTTTATTGTCTGAAACTCTCCATACTCTTTGAGAATGGGAGACAAGGAGGTAAAAGAAGAACTCAAGCCCATCACCCAATGGAAGAAACAGAAAGGTGGTTTCAGGGCTACCATGTTCATCTTTGTTTTGTCAGCATTGGACAACATGGGTTTCGTGGCAAACATGGTGAGCTTGGTCCTATACTTTTATGGGGTGATGCACTTTGATCTGTCCAGCTCTGCCAACACTCTGACAAACTTTATGGGTTCAACGTTCTTGCTCTCCCTCGTTGGTGGCTTCATCTCGGATACTTACTTGAACAGACTAACCACATGCTTGCTTTTTGGATCACTCGAAGTTGTGGCTTTGGTAATACTCACAGTTCAAGCTGCTTTAGACCAATTACACCCTGATGCCTGTGGCAAGTCAAGCTGTGTCAAGGGAGGTGTAGCAGTCATGTTCTACACATCATTGAGTTTGTTGGCGCTGGGCATGGGTGGAGTCAGAGGATCCATGACTGCATTTGGTGCTGACCAGTTTGATGAAAAGAATCCAACTGAAGCAAAANCTCTTCCAAGCTTCTTCAATTGGCTTTTGCTCAGTTCAACCCTGGGATCAGTTATAGGGGTTACTGGGGTGGTGTGGGTGAGCACCCAAAGAGCTTGGCATTGGGGATTTTTCATAATAACCGTAGCTTCCTCCATTGGCTTTGTCACCCTTGCTCTTGGCAAGCCATATTACCGCATCAAAACTCCTGGTGAAAGCCCCATTTTGAGGATTGCTCAGGTTATTGTTGTAGCTTTTAAGAACCGAAAGCTACCACTGCCAGAGTCTCATGAACAACTTTATGAGGCCTATAAAGATGTTACTACTACATCAGAGAAGATTGCACACACCAACCAGATGAGGTTTCTAGATAAAGCGGCCATTCTTCAAGAAAACTCTGAACCGCAACAATGGAAGGTGTGCACAGTGACACAAGTAGAAGAAGTGAAGATCCTGACCAGAATGTTACCTATACTAGCCAGTACCATTGTAATGAACACTTGTTTGGCACAGCTTCAAACATTCTCAGTCCAGCAAGGGAATGTGATGAACCTGAAACTTGGTTCTTTCACTGTGCCTGCAGCATCCATTCCTGTCATCCCCCTTCTTTTTTTGTGCATACTGATTCCCCTTTACGAGTTNTTCTTTGTGCCATTCGCACGTAAGATCACTCACCACCCTTCAGGCGTGACACAGCTTCAAAGAGTTGGTGTGGGGTTGGTGCTTTCCTCCATTTCAATGACAATAGCTGGGATCATAGAGGGTGTGGCTGAAACACCTCTCATAATGGTTGGTGACAGAAAACATCATGATGGGAGCATCCAAGATCAGAGAGCCAAGGCCAAAGAAAGCAGCCAAACTAGTGAAGCCAATACTGAGGGACCCTTTTCCTCTGATGAAACAGATGATGATNATGGCAAAGAAAAAGAAAGAAACGCTAGAGAATGGAAGCACAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	32635	35933	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002899.1	PF00854.16	PTR2	93	419	3.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.019
SRR1783600	control	6.000
SRR1783602	moderate drought stress	2.606
SRR1811619	moderate drought stress	2.754

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.704
DRR006520	Root Summer glycyrrhizin high producing strain	3.239
DRR006521	Root Winter glycyrrhizin high producing strain	0.148
DRR006522	Root Winter glycyrrhizin high producing strain	0.140
DRR006523	Root Summer glycyrrhizin low producing strain	1.138
DRR006524	Root Summer glycyrrhizin low producing strain	0.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.600
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.677

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.963
SRR2868004	Drought Stress (root)	9.693
SRR2967015	Control (root)	8.393

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.771
SRR9715740	Leaf	0.946
SRR9715741	Leaf	1.392
SRR9715739	Root	2.202
SRR9715742	Root	9.112
SRR9715743	Root	9.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.283
SRR8749028	MeJA induced 9h	0.307
SRR8749029	MeJA induced 9h	0.229
SRR8749030	Uninduced	0.560
SRR8749031	Uninduced	0.340
SRR8749032	Uninduced	0.463

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.810
SRR8400027	Control - Root	17.720