Gene detail information of Glyur000034s00002897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62020.1 | 3.00E-81 | germin-like protein 10 |
| NR | XP_004495826.1 | 6.00E-135 | PREDICTED: rhicadhesin receptor-like [Cicer arietinum] |
| COG | YP_005057816.1 | 4.00E-09 | cupin [Granulicella mallensis MP5ACTX8] |
| Swissprot | tr|Q6I544|GL52_ORYSJ | 1.00E-105 | Germin-like protein 5-1 (Precursor) |
| trEMBL | tr|G7IAE2|G7IAE2_MEDTR | 3.00E-131 | Uncharacterized protein {ECO:0000313|EMBL:AFK43029.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 19515 | 21611 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002897.1 | PF00190.17 | Cupin_1 | 64 | 207 | 3.60E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.211 |
| SRR1783600 | control | 4.179 |
| SRR1783602 | moderate drought stress | 3.741 |
| SRR1811619 | moderate drought stress | 3.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.404 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.934 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.680 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.715 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.883 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.780 |
| SRR2868004 | Drought Stress (root) | 13.147 |
| SRR2967015 | Control (root) | 11.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.442 |
| SRR9715740 | Leaf | 3.294 |
| SRR9715741 | Leaf | 4.568 |
| SRR9715739 | Root | 2.620 |
| SRR9715742 | Root | 29.495 |
| SRR9715743 | Root | 21.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.160 |
| SRR8749028 | MeJA induced 9h | 0.429 |
| SRR8749029 | MeJA induced 9h | 0.230 |
| SRR8749030 | Uninduced | 0.618 |
| SRR8749031 | Uninduced | 0.525 |
| SRR8749032 | Uninduced | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.677 |
| SRR8400027 | Control - Root | 13.202 |