Gene detail

Gene detail information of Glyur000034s00002895.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26710.1	0	Glutamyl/glutaminyl-tRNA synthetase, class Ic
NR	KHN13967.1	0	Putative glutamate--tRNA ligase, cytoplasmic [Glycine soja]
COG	YP_006426721.1	3.00E-87	glutaminyl-tRNA synthetase [Ornithobacterium rhinotracheale DSM 15997]
Swissprot	tr\|P52780\|SYQ_LUPLU	3.00E-66	Glutamine--tRNA ligase
trEMBL	tr\|I1LAX4\|I1LAX4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G28180.1}

Sequence

Transcript Sequence

>Glyur000034s00002895.1
AAAAAACCAACTTTGCTTGCTTAACCTAAACCTTCGTTTCTGCTAAGGAGCAATCACGATTCACCAGTTGTGTCTGTCTTTGTCTTGGTGTTTATTATTGGCTCCGCATGGACCTCAAAACCTTTGCCTTTACCGCAGCCACGCCGCCGTTAGCGGTGATCGCCGCCGTCAAGCTCGCCGGATTCTCTCCCTCGATCGACACCTCTCTCCCTCCTGACTCCCCTCCCACATTTCTCTTCTCCAATGGGTCTAAATTGCATGGAGCATTTGTTCTTCTGCGTTATATTGGGAGAGCTGCCAGCCTTCCCAATTTCAATGGGCAAGATGCATTTGAAACTGGCCAGATTGATGAATGGCTGGAGTACGCTCCTGTACTCTCATCTGGCCCTGCCTTTGAGAATGCATGCAAATATATAGATGAGTNCTTGGAGAAGCGTACATTTTTAGTTGGTTATTCGTTGTCAATTGCGGATCTAGCTATCTGGGCAGGTCTTGCAGGAGCTGGAAAGAGATGGGAAAGTCTGAGGAAGTCGAAGAAATATCCAAATCTTGTACGATGGTTCAATTCAATAGTGACAGAATATGGTACTGCCTTAAACGAAGTCACAACAACATATGTTGGCAAGAAAGGATTGGGAGAGCCATCAGCAACCAAGTCAAAAGACCAGCCGGTGGTCGCTAATAAAGTGAAGAATGTGAATGGGGATGTATCTGAAAACGTTAAAGGAGGAAGCAAACCTTCAGCAGAAATAGATCTTCCAGACGCTGAACTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCACATTGGACACTCAAAAGCAGCTCTGTTGAACAAGTATTTTGCCGAGCGATACCAAGGCCAGGTTATTGTGCGTTTTGATGATACCAATCCTGCTAAAGAAAGCAATGAATTTGTGGAAGAATTGGTGAAAGATATTGATACATTAGGTATCAAATATGAAACAATTACATATACATCAGATTACTTTCCTGAGTTGATGGAAATGGCTGAAAATTTAATTCGCCAGGGTAAGGCATATGTTGATGACACTCCTCGTGAACAAATGCAGAAGGAGAGAATGGATGGTATAGAATCTAAATGCAGAAACAATAGTGTAGAGGAGAATCTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTTGCAGTGTTGTGTCCGTGGGAAGTTGGATATGCAAGACCCAAACAAATCACTTCGTGATCCTGTTTATTATCGTTGCAATCCAATGCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCATGTCCATATGTTGATGCTAGGGAAGGTATCACGCATGCCCTTCGATCAAGTGAATACCATGATCGCAATGCTCAGTATTACCGGATTCAAGAGGACATGGGACTTAGAAAAGTTCTCATCTATGAATTCAGCCGGTTGAATATGGTCTACACTCTTCTTAGCAAACGAAAGCTTCTATGGTTTGTCCAAAATGGGAAAGTTGATGGATGGGATGATGCACGTTTTCCTACAGTGCAAGGAATTGTGCGCAGAGGTTTGAAAATTGAAGCACTAATACAGTTTATNGTTGAACAAGGGGCTTCCAAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATTAATAAGAAGATTATTGATCCTGTATGTCCCAGACACACTGCTGTCGTTGCAGATAAACGCGTGTTGTTGACCCTCACTGATGGTCCTGAGAAACCATTCGTCCGCATCATACCTAGGCACAAGAAATATGAAGGTGCCGGAGATAAAGCTACCACATATACTAAAAGGATATGGATTGACCATGCTGATGCAGAGTCCATATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTGAAGGAAGTAGAGAAGGACCAAGATGGGAATGTCACCGGGTTGAGTGGTGTTTTGCATCTTGAAGGATCTGTGAAGACTACAAAATTGAAGCTCACTTGGCTACCTGAGATAGATGAACTAGTTAGCCTGACATTGGTGGAGTTTGATTATCTAATTACAAAGAAAAAGCTTGAAGAAGGGGAAGATTTCATTGATGTGCTTAACCCGTGTACTAAAAAGGAGACCGTAGCGTATGGAGACTCCAACATGCGAAATCTTCAGCGTGGAGAGGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCATTCGGCCTTCAAAACCAATCGTCTTGTTTGCAATCCCTGATGGCAGGGGCAAACATGTTTGATTTTGAAGTAATAATCTTATTTGTTCTTTAAACTGTCTCTTTAGAGCATAACTCAGACTCAGCACCGTTGTAATTTTGATGACAAGAAGTTTGTGGAATTATTTTCATGTTTACCATTGTAATTGGGTTCTTGACTNGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	13124	17103	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01885	EARS, gltX	EC:6.1.1.17	Porphyrin and chlorophyll metabolism	map00860
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006412 translation

GO:0006418 tRNA aminoacylation for protein translation

GO:0006424 glutamyl-tRNA aminoacylation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004818 glutamate-tRNA ligase activity

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002895.1	PF14497.1	GST_C_3	73	155	5.70E-11
Glyur000034s00002895.1	PF00749.16	tRNA-synt_1c	224	528	3.60E-97
Glyur000034s00002895.1	PF03950.13	tRNA-synt_1c_C	531	708	2.40E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.017
SRR1783600	control	26.530
SRR1783602	moderate drought stress	25.048
SRR1811619	moderate drought stress	25.089

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.856
DRR006520	Root Summer glycyrrhizin high producing strain	32.661
DRR006521	Root Winter glycyrrhizin high producing strain	32.961
DRR006522	Root Winter glycyrrhizin high producing strain	32.121
DRR006523	Root Summer glycyrrhizin low producing strain	24.722
DRR006524	Root Summer glycyrrhizin low producing strain	24.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.792
SRR2868004	Drought Stress (root)	50.589
SRR2967015	Control (root)	46.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.987
SRR9715740	Leaf	18.995
SRR9715741	Leaf	25.208
SRR9715739	Root	10.493
SRR9715742	Root	37.587
SRR9715743	Root	33.940

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.491
SRR8749028	MeJA induced 9h	41.676
SRR8749029	MeJA induced 9h	51.306
SRR8749030	Uninduced	49.692
SRR8749031	Uninduced	62.275
SRR8749032	Uninduced	64.796

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.329
SRR8400027	Control - Root	42.971