Gene detail

Gene detail information of Glyur000034s00002894

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09570.1	0	phytochrome A
NR	P93673.1	0	RecName: Full=Phytochrome type A [Lathyrus sativus]
COG	YP_007123595.1	2.00E-75	bacteriophytochrome (light-regulated signal transduction histidine kinase) [Microcoleus sp. PCC 7113]
Swissprot	tr\|P93673\|PHYA_LATSA	0	Phytochrome type A
trEMBL	tr\|Q68HK1\|Q68HK1_PEA	0	Phytochrome {ECO:0000256\|PIRNR:PIRNR000084}

Sequence

Transcript Sequence

>Glyur000034s00002894.1
TGAAGGAGGCGATGAAGTGAAGTGAAGGGAGGAGAAAGTAACTCCCATGTTGCTGCTGCTGCTATTCATTCATTTATGGTGGCTACTATAAAAATTGATATCTTTATGGCATGGGCGGTCCCTCCTCACAGTTGTGTGCTGAGTGAGTGGTGAGCTTGGAGTTGGAAAAGGTGGGGTTCCCTGCAGGGTGATCGAGATTCACCTTGTTTTTCCCCTTCATGATATTGGTGCACCTGCACCTGCAGCAGCAGGATATGGTGGTCACCCTCACACCCACCTGGTTATTTTAACCCCTCAAGCTTCTCTTCAACTCTCTCTCCCTCATTGGTTTGATTGTTACCAGTTGCAAGGCGAAAATGTCTTCCTCAAGGCCTAGCCAATCGTCCACCAATTCGGGGAGATCAAGACATAGTGCTAGGATTATTGCTCAGACCACCGTAGACGCAAAACTCCATGCCACTTTTGAGGAGTCNGGTAGTTCCTTTGACTACTCCAGTTCAGTGCGCATCTCCGGCTCAGCTGATGGAGACCATCAACCGAGGTCCAGCAAAGTAACAGCAGCTTACCTCCATCACATCCAGAGAGGCAAGCTGATCCAGCCCTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACATGTAAGGTCATCGCATACAGTGAGAACGCACCCGAAATGCTGACCATGGTGAATCATGCTGTCCCTAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAGAACTATCTTCACTGCGCCAAGCGCTTCCGCGTTGCAGAAGGCACTAGGATTTGGGGAGGTTTCGCTTCTTAACCCCATTCTTGTTCATTGCAAGACTTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACTGGTAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCTGCAAAAGCAATTACTCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAAGGCTTTGTGATACAATGGCTCAAGAGGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCACGGGGAGGTGATTGCTGAGATAGCAAAGCCAGGCCTAGAGCCATATCTGGGTTTGCACTATCCAGCCANGGATATTCCCCAAGCTTCACGCTTTTTATTCATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGATGAAAAGCTCCCATTTGATTTGACTTTGTGTGGTTCAACTTTAAGGGCTCCCCATAGTTGCCATTTGCAATACATGGCAAACATGAATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAGTGATGAAGATGGGGATAGCTCTGATGCAGTTCAGCCACAAAAGAGAAAGAGACTCTGGGGTTTGGTAGTTTGCCATAATACTACTCCCAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGCGAGTTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAATTAGAATACCAGATTGTTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGCGCCCTTAGGTATTGTATCACAGAGCCCCAATATAATGGATCTAGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAATGTATGGATATTAGGAGTGGCACCAAGTGAACCTCAGATAAGAGAGATAGCTTTATGGCTGTCTGAGTACCATACGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGTCTCTTTCTCTTGGTGATATTGTATGTGGAATGGCAGCCGTTAGAATTTCTTCGAAGGACATAGTTTTCTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGTGAACAGGATGATGGTAAGAGGATGCATCCGAGATCGTCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCTAGGAGCCTACCATGGAAGGACTATGAAATGGATGCTATTCATTCGTTGCAGTTAATACTGAGAAACGCATTCAAAGATACAGAGAGTATGGATTTAAACACAAATGCAATCAATACAAGATTAAGTGATTTGAAGATTGAAGGGATGCAGGAATTGGAAGCAGTGACAAGTGAGATGGTTAGGTTAATCGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAATATAAAAATTGCCGAGTTGACAGGTCTTCAAGTTGGTGAAGCTATTGGAAAGCATTTACTGTCACTTGTTGAGGATTCTTCAACTGATATAGTCAAGAAGATGCTCAACTTGGCACTGCATGGTGAAGAAGAGAAGAATGTCCAATTCGAGATCAAAACGCATGGGTCTAAGATGGATTCTGGACCTATTAGTTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCGTGATAATGTAGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACTGTGATGGACAAGTTCACCAGAATTGAAGGGGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGATAAAGTTAACTGGATGGAAGCGAGAGGAGGTAATGGATAAAATGCTTTTAGGAGAGGTTTTCGGAACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTACTTAATAAAGCCATGGCTGGTTTGGAAACGGAGAAGGTTGCTTTTGGCTTCTTTGCTCGGAATGGCAAGTATGTAGAATGCCTACTTTCTGTGACTAAGAAATTGGATGCGGAGGGCCAAGTTACTGGAGTCTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGCCTATCTGAACAAACTGCTCTCAAGAGACTGAAAGCATTAACTTATATGAAAAGGCAGATCAGGAGTCCTTTGTCTGGGATTATGTTTTCCAGGAAAATGTTGGAGGGTACTGACTTGGGAGCAGAACAAAAACGACTTCTGCACACTAGTGCCCAGTGCCAGCACCAGCTCGGCAAAATTCTTGATGACTCAGATCTCGACAGCATCATTGATGGCTACTTGGATCTTGAGATGGCTGAATTCACTCTGCATGATGTACTGGTTGCCTCCCTTAGTCAAGTCATGACAAATAGTAATGCAAAGGGTATCCAAATAGTCAACGATGTCGCGGAGCAGATCGTGATGGAAACCTTATACGGTGATTGTCTTAGGCTTCAGCAGGTCTTGGCAGACTTTTTACTAATTTCCATCAATTTTACACCAAATGGAGGTCAGGTTGTTCTAGCAGCCTCTCTAACTAAAGAACAGTTAGGGAAATCTGTCCATCTTGTCAATTTGGAACTCAGCATAACACATGGTGGTAGTGGGATGCCAGAAGCATTGCTGAATCAGATGTTTGGAAATAGTGGGCTAGAATCTGAGGAGGGTATTAGCCTACACATCAGCAGAAAGTTGCTAAAGCTCATGAGTGGAGATGTTCGTTATCTAAGGGAAGCAGGCAAATCATCTTTTATCCTATCTGTTGAACTTGCTGCAGCCCATAAGTTGAAAGCTTGAAATTTTGGAGAAAATGAATAAGATGGTTACAACATGATCTGTTTTGTACATCAGAAAAAGAGAATGGAGTGAGATATTAACTTCATTCCTTGTTCAATGTAACTCTTGATTTGTTTCACGTTTCAATAACTTCTTGTAACGTACGCTGTAGATATGTATTAATCTCCTTCACATTCCTTGACCTTTTCTCCTAGTCAA

Protein Sequence

>Glyur000034s00002894.1
MSSSRPSQSSTNSGRSRHSARIIAQTTVDAKLHATFEESGSSFDYSSSVRISGSADGDHQPRSSKVTAAYLHHIQRGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVNHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMAQEVFELTGYDRVMAYKFHEDDHGEVIAEIAKPGLEPYLGLHYPAXDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMNSIASLVMAVVVNDSDEDGDSSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNNVWILGVAPSEPQIREIALWLSEYHTDSTGLSTDSLSDAGFPGSLSLGDIVCGMAAVRISSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGKRMHPRSSFKAFLEVVKARSLPWKDYEMDAIHSLQLILRNAFKDTESMDLNTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLQVGEAIGKHLLSLVEDSSTDIVKKMLNLALHGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMIKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMAGLETEKVAFGFFARNGKYVECLLSVTKKLDAEGQVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRSPLSGIMFSRKMLEGTDLGAEQKRLLHTSAQCQHQLGKILDDSDLDSIIDGYLDLEMAEFTLHDVLVASLSQVMTNSNAKGIQIVNDVAEQIVMETLYGDCLRLQQVLADFLLISINFTPNGGQVVLAASLTKEQLGKSVHLVNLELSITHGGSGMPEALLNQMFGNSGLESEEGISLHISRKLLKLMSGDVRYLREAGKSSFILSVELAAAHKLKA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00034	2596	9178	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0006355 regulation of transcription, DNA-templated

GO:0007165 signal transduction

GO:0009584 detection of visible light

GO:0009585 red, far-red light phototransduction

GO:0017006 protein-tetrapyrrole linkage

GO:0018298 protein-chromophore linkage

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

GO:0009881 photoreceptor activity

GO:0042803 protein homodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000034s00002894.1	PF08446.6	PAS_2	69	185	1.60E-40
Glyur000034s00002894.1	PF01590.21	GAF	219	401	3.70E-38
Glyur000034s00002894.1	PF00360.15	PHY	412	589	1.90E-71
Glyur000034s00002894.1	PF00989.19	PAS	620	734	8.90E-22
Glyur000034s00002894.1	PF00989.19	PAS	750	872	1.60E-24
Glyur000034s00002894.1	PF00512.20	HisKA	898	953	5.50E-06
Glyur000034s00002894.1	PF02518.21	HATPase_c	1007	1112	2.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.682
SRR1783600	control	62.983
SRR1783602	moderate drought stress	49.960
SRR1811619	moderate drought stress	49.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.670
DRR006520	Root Summer glycyrrhizin high producing strain	53.089
DRR006521	Root Winter glycyrrhizin high producing strain	33.936
DRR006522	Root Winter glycyrrhizin high producing strain	33.228
DRR006523	Root Summer glycyrrhizin low producing strain	43.523
DRR006524	Root Summer glycyrrhizin low producing strain	43.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.995
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.017

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.153
SRR2868004	Drought Stress (root)	60.644
SRR2967015	Control (root)	68.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.426
SRR9715740	Leaf	21.579
SRR9715741	Leaf	19.909
SRR9715739	Root	27.372
SRR9715742	Root	87.364
SRR9715743	Root	77.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.143
SRR8749028	MeJA induced 9h	16.800
SRR8749029	MeJA induced 9h	9.827
SRR8749030	Uninduced	9.363
SRR8749031	Uninduced	5.687
SRR8749032	Uninduced	5.748

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.592
SRR8400027	Control - Root	98.923