Gene detail

Gene detail information of Glyur000033s00008644

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13590.1	2.00E-113	Uncharacterized protein family (UPF0016)
NR	XP_004497743.1	0	PREDICTED: GDT1-like protein 2, chloroplastic-like [Cicer arietinum]
COG	NP_442278.1	3.00E-46	hypothetical protein sll0615 [Synechocystis sp. PCC 6803]
Swissprot	tr\|Q9T0H9\|GDT12_ARATH	7.00E-150	GDT1-like protein 2, chloroplastic (Precursor)
trEMBL	tr\|V7BK40\|V7BK40_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17415.1}

Sequence

Transcript Sequence

>Glyur000033s00008644.1
CTTTATCTCCCTTTGCATACGTGGCAGCCTTCAATAACTATCTCTCTCTCTCTCTCTCCGGCATCTACACAACACACGACTCTCAACTGGGTAACGCTTCAAAGTTTCGAACTTTGTGAAAAGTTTTGAGTTCTGTTGTCCAGAATTTGCAGTACCCACAAACCCAACCAGGGAGGAAAAAAAAAAAATGAAACTGTAGAAACCAGTTTTGTAGTAAAACATGAAAGGGTTAGGTCCTCACACACCCTTGTTGGTTTCAAAGGGAAAGCCTCCTCGTTTGTTGGCAGTGGTGGATGCATTACCATGCTGTTCTCATTTCTCTAGAACCACCACCCTTTTATCCCCACCATCGAGTGACGTCATGCCTAAATTGTATATAGTAAGAAGATGCAGACAGAAATCGAGGTTGAGCTTGGCCCATGGCACAATTCGAGCCCAAGCATCAAATGTTAGTGTTGGACCTGGAGATTATGGAAGCAACAATGAGAAAGACGGCCAGAATGTCTTTGAAAGAAATCCTGACGGTGACAGTTCATCTAAAATTGATAAACCGAATCGGATTCCTTATCCTATCTCTATAGCTTTGGTGCTGTTTGGATGCGCTCTTGTGTTTTCACTAATAGCCTTTGTGAAAGGGGGACCTTCATCGGTTCTAGCAGCAATCGCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAGATTGGGGACAAGACATTCTTTATTGCTGCACTCTTGGCAATGCAATATGAGAAGGGACTGGTTCTATTAGGATCAACAGGTGCTCTTGCACTCATGTCAATCCTATCTGTTGTAATTGGCCGTATCTTTCAATCAGTGCCTGCTCAGTTCCAGACAACCTTGCCGATCGGAGAATATGCAGCAGTAACTCTTCTTTTGTTTTTTGGCNTAAAATCAATAAAAGATGCATGGGATCTTCCATCAGATGTGGTTAAGAATGGTGATAACAGNAGTCCTGAACTTGATGAACTTGCTGAAGCAGAGGAGCTTGTGAAAGAAAAGGTATCGAAACGGCTTTCAAATCCACTTGAGATTATTTGGAAATCATTCAGCCTTGTGTTTTTTGCTGAATGGGGAGATCGCTCGATGCTTGCAACGATTGCACTCGCGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACTTACTTGCAACATCTATTGCCATTCTTGGAGGAGCATTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTGTTTCTAATTTTTGCTGTAGCCACCTTTTGTGGGGTATTCTGATTTCTGCCTAGCCTTACTCCATTTTTTTTCTGTGCAATATATCACTGATGGAGATAATTCATTGGTGAGCAAATTCATACTTCGACTTTGTTGATTTCCTTGAGTAGATATTAGGAGCAAATTGCTCACAACGGTTAGAGAATAAGAAGCATGGAATCTGCCATTAGAGTTAGGCTATGAGGAGAAACTTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00033	440200	445808	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000033s00008644.1	PF01169.14	UPF0016	153	233	8.10E-19
Glyur000033s00008644.1	PF01169.14	UPF0016	284	358	4.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.302
SRR1783600	control	7.229
SRR1783602	moderate drought stress	7.654
SRR1811619	moderate drought stress	7.481

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.936
DRR006520	Root Summer glycyrrhizin high producing strain	8.844
DRR006521	Root Winter glycyrrhizin high producing strain	11.285
DRR006522	Root Winter glycyrrhizin high producing strain	10.602
DRR006523	Root Summer glycyrrhizin low producing strain	9.669
DRR006524	Root Summer glycyrrhizin low producing strain	9.563
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.188
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.816
SRR2868004	Drought Stress (root)	15.725
SRR2967015	Control (root)	15.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.953
SRR9715740	Leaf	38.679
SRR9715741	Leaf	22.178
SRR9715739	Root	4.046
SRR9715742	Root	5.508
SRR9715743	Root	5.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.045
SRR8749028	MeJA induced 9h	9.402
SRR8749029	MeJA induced 9h	6.769
SRR8749030	Uninduced	10.977
SRR8749031	Uninduced	7.003
SRR8749032	Uninduced	5.207

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.890
SRR8400027	Control - Root	15.422