Gene detail

Gene detail information of Glyur000033s00008642.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24050.1	4.00E-35	GATA transcription factor 1
NR	KHN48447.1	4.83E-122	GATA transcription factor 1 [Glycine soja]
Swissprot	tr\|Q8LAU9\|GATA1_ARATH	2.00E-46	GATA transcription factor 1
trEMBL	tr\|I1LAK4\|I1LAK4_SOYBN	4.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G25480.1}

Sequence

Transcript Sequence

>Glyur000033s00008642.1
ATGAGGGAGATAGGACAAGTGAGTAGAAAACTTCCTGATCAGAGCGCCACTAATTTGTGCCAGGCACTGTTAGGCTTCAACATTTCTTTGTTTTCAGGGATGGAGGCCCTTGGTTCTGTGGATGACCTCTTGGATTTCTCGTCAGACATAGGTGAGGACGATGATGATGATGACAAACCTAGGAAAGACTTTCCTAAACTTAACCCAAAATGCAGTGCTCCACCATCGCTTAATCCATTGGACCCGGATGATCCTAGTCATTCTTTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTGCTGTTGAAACATTTGTTGATCTACATTCCATTCAACCCGGTATATCGAAGCACCAAAAGGCAGCCCCAATGCTTGAGTACAGCACAAGCAGTAGCAACAGTAATAACAGCACCAACAGCATTACCCTTTTAAGTGGCTATGATCACCTGAAGGTCCCTGTCCGTGCACGGAGCAAGGGTCGCAGCAGGCGTCGCCCTGGCATTGCTGACATCTCTGGCCAGCAATTCCCATGGACACAACNAAGTGACAAAAACTCCAAAGAAGAAGTCATGAAAGTCTCGACCATTGGGAGGAAATGTCATCACTGCGGGGCTGAAAAAACTCCGCAGTGGCGGGCAGGCCCCCTTGGTCCAAAAACGCTTTGCAATGCATGTGGAGTTAGGTTTAAGTCTGGCCGGCTTGTGCCTGAATACCGTCCTGCGAGTAGCCCAACTTTTCGTAGTGAATTGCACTCTAATTCCCATAGGAAGATTGTAGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGAAGGCCATGGATAAAATGCAAAGTGATGGGAAGTGAAAATTCTTGATGCAAATTGAAGTTAGAGAGGCCTTAAATCATTTGTGTGTCTTTGTTATGCTGAAAACAAGAAGCCATTTTGGATTTTTTTTTATTTGGCTGTTTTTATGCTTGTAACTTGTACTTTGATTGGGGATTGGGGAGAGGGTGAGTTGCAGGAATGATGGTTGTGGTCCCTTTACCAGAGAGAAGCTCTTATATTTATCTGAAATTCTAAATTGATGGATAGTGGTGCAGTTGAGTGTTGAGGAATTAAGACATCATTCAAGGATTTGTGACATCATTCTTGTATTTGAAGAAAGTAAAAAAATGCTGTCTTATGTATGGACAGGTATGTTCTTTGTTATTTGATCCTCCTTAGAAGGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00033	432921	435952	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0008270 zinc ion binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000033s00008642.1	PF00320.22	GATA	207	241	6.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.768
SRR1783600	control	9.802
SRR1783602	moderate drought stress	12.090
SRR1811619	moderate drought stress	12.015

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.345
DRR006520	Root Summer glycyrrhizin high producing strain	14.472
DRR006521	Root Winter glycyrrhizin high producing strain	20.996
DRR006522	Root Winter glycyrrhizin high producing strain	20.920
DRR006523	Root Summer glycyrrhizin low producing strain	16.312
DRR006524	Root Summer glycyrrhizin low producing strain	16.824
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.190
SRR2868004	Drought Stress (root)	9.635
SRR2967015	Control (root)	9.700

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.775
SRR9715740	Leaf	23.797
SRR9715741	Leaf	14.036
SRR9715739	Root	8.024
SRR9715742	Root	10.597
SRR9715743	Root	10.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.265
SRR8749028	MeJA induced 9h	8.051
SRR8749029	MeJA induced 9h	12.106
SRR8749030	Uninduced	6.635
SRR8749031	Uninduced	3.135
SRR8749032	Uninduced	4.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.268
SRR8400027	Control - Root	13.386