Gene detail information of Glyur000033s00008640 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60080.1 | 3.00E-64 | 3'-5'-exoribonuclease family protein |
| NR | XP_003531860.1 | 2.32E-145 | PREDICTED: exosome complex component RRP43-like [Glycine max] |
| COG | NP_613665.1 | 5.00E-22 | exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri AV19] |
| trEMBL | tr|I1KWF8|I1KWF8_SOYBN | 9.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G27080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00033 | 425289 | 429426 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000033s00008640.1 | PF01138.16 | RNase_PH | 105 | 148 | 2.70E-05 |
| Glyur000033s00008640.1 | PF03725.10 | RNase_PH_C | 186 | 235 | 0.00018 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.968 |
| SRR1783600 | control | 4.161 |
| SRR1783602 | moderate drought stress | 5.846 |
| SRR1811619 | moderate drought stress | 5.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.929 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.038 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.490 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.087 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.892 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.901 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.232 |
| SRR2868004 | Drought Stress (root) | 8.886 |
| SRR2967015 | Control (root) | 6.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.734 |
| SRR9715740 | Leaf | 5.437 |
| SRR9715741 | Leaf | 4.281 |
| SRR9715739 | Root | 1.462 |
| SRR9715742 | Root | 4.863 |
| SRR9715743 | Root | 2.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.116 |
| SRR8749028 | MeJA induced 9h | 2.120 |
| SRR8749029 | MeJA induced 9h | 2.985 |
| SRR8749030 | Uninduced | 1.442 |
| SRR8749031 | Uninduced | 0.780 |
| SRR8749032 | Uninduced | 0.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.457 |
| SRR8400027 | Control - Root | 7.263 |