Gene detail

Gene detail information of Glyur000033s00008626

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04690.1	2.00E-175	potassium channel beta subunit 1
NR	XP_004497756.1	0	PREDICTED: probable voltage-gated potassium channel subunit beta-like [Cicer arietinum]
COG	YP_003289383.1	3.00E-142	voltage-dependent potassium channel subunit beta [Rhodothermus marinus DSM 4252]
Swissprot	tr\|O23016\|KCAB_ARATH	0	Probable voltage-gated potassium channel subunit beta
trEMBL	tr\|I1NEH6\|I1NEH6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G19000.1}

Sequence

Transcript Sequence

>Glyur000033s00008626.1
CACCTTCAAATCACAGCCGTTGGTTTCCTTCGATCCGAATCCAACAGTACAAATTTGGCGATTCCCATTTCTCGATCCTTGGTCNTTGTGATTCACACATTGTGTCACGAGCTACTATCGATCGATTATATTCCATCTCACTCTCACTCTTTCTCTCTCTCTGTCTCGGAAGCATCACTCTCACAAACACTCTCACACAGGAGGAGTAGCAGCAAAAAGCATTGGATTTGGGGATCACTTCGACATTTTACAAGATGCAGTACAAGAACTTAGGTCGATCGGGGTTAAGGGTGAGCCAGTTATCTTACGGCGCTTGGGTTAGCTTCGGGAACCAGCTAGACGTGAAGGAAGCCAAGTCCCTCCTCCAGTGCTGCCGTGATCACGGCGTCAACTTCTTCGACAACGCCGAGGTCTACGCAAACGGCCGAGCCGAGGAGATAATGGGCCAGGCCATACGCGAATTGGGCTGGAAGCGTTCCGACATCGTCGTGTCCACTAAGATCTTCTGGGGCGGACAGGGCCCAAACGACAAGGGACTATCGCGCAAGCACATCGTGGAAGGCACGCGCGCTTCGCTCAAGCGACTCGACATGGAATACGTTGATGTCATCTATTGCCACCGCCCTGACCCTTCCACTCCGATTGAGGAGACTGTGAGGGCCATGAACCATGTCATTGATAGGGGTTGGGCTTTCTATTGGGGCACTAGTGAGTGGTCGGCCCAGCAGATCACTGAGGCTTGGGCCGTTGCTCATCGGTTGGACTTGGTTGGCCCAATTGTTGAGCAGCCCGAGTATAACCTCTTCTCCAGGCACAAGGTTGAGTCTGAGTATCTTCCACTTTACTCCACTTATGGTTTGGGTCTCACCACTTGGAGTCCACTTTCATCCGGAGTTCTCACNGGAAAATACAAGAAAGGAGTGATCCCCCCTGATAGCCGCTTTGCTTTGGAAAATTACAAAAATCTGGCAGCTCGATCACTGGTTGATGACGTGCTGCGGAAGGTGGATGGTCTAAAGCCAATTGCAGATGAACTGGGCGTGCCATTGTCACAGCTTGCAATTGCGTGGTGTGCGGCTAATCCTAATGTTTCCTCAGTTATCTGTGGTGCTACGAAAGAGTCTCAGATTCAAGAGAACATGAAGGCTATTGATGTCATTCCATTACTGACTCCTGCTGTGATGGAGAAGATTGAGACTGTTGTTCAAACCAAGCCAAAGCGCCCTGATTCGTATAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00033	262032	265350	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000033s00008626.1	PF00248.16	Aldo_ket_red	16	316	4.70E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.890
SRR1783600	control	41.963
SRR1783602	moderate drought stress	42.239
SRR1811619	moderate drought stress	42.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.544
DRR006520	Root Summer glycyrrhizin high producing strain	38.061
DRR006521	Root Winter glycyrrhizin high producing strain	5.241
DRR006522	Root Winter glycyrrhizin high producing strain	5.070
DRR006523	Root Summer glycyrrhizin low producing strain	36.531
DRR006524	Root Summer glycyrrhizin low producing strain	37.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	121.435
SRR2868004	Drought Stress (root)	60.909
SRR2967015	Control (root)	64.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.791
SRR9715740	Leaf	39.157
SRR9715741	Leaf	40.954
SRR9715739	Root	49.568
SRR9715742	Root	31.314
SRR9715743	Root	37.022

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.391
SRR8749028	MeJA induced 9h	28.527
SRR8749029	MeJA induced 9h	31.397
SRR8749030	Uninduced	8.725
SRR8749031	Uninduced	3.001
SRR8749032	Uninduced	8.894

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.509
SRR8400027	Control - Root	61.917