Gene detail information of Glyur000033s00008609 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04780.1 | 0 | Ankyrin repeat family protein |
| NR | XP_003555711.1 | 0 | PREDICTED: ankyrin repeat domain-containing protein 13C-like [Glycine max] |
| trEMBL | tr|I1NEG9|I1NEG9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G18890.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00033 | 172116 | 177535 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000033s00008609.1 | PF12796.2 | Ank_2 | 53 | 126 | 2.90E-08 |
| Glyur000033s00008609.1 | PF11904.3 | GPCR_chapero_1 | 186 | 628 | 1.20E-103 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.707 |
| SRR1783600 | control | 11.676 |
| SRR1783602 | moderate drought stress | 11.698 |
| SRR1811619 | moderate drought stress | 11.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.987 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.922 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.414 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.002 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.228 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.733 |
| SRR2868004 | Drought Stress (root) | 38.768 |
| SRR2967015 | Control (root) | 42.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.628 |
| SRR9715740 | Leaf | 25.409 |
| SRR9715741 | Leaf | 34.305 |
| SRR9715739 | Root | 2.803 |
| SRR9715742 | Root | 9.780 |
| SRR9715743 | Root | 9.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.163 |
| SRR8749028 | MeJA induced 9h | 24.375 |
| SRR8749029 | MeJA induced 9h | 20.196 |
| SRR8749030 | Uninduced | 26.526 |
| SRR8749031 | Uninduced | 73.737 |
| SRR8749032 | Uninduced | 30.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.340 |
| SRR8400027 | Control - Root | 27.657 |