Gene detail

Gene detail information of Glyur000033s00008608.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45710.1	3.00E-50	winged-helix DNA-binding transcription factor family protein
NR	AGJ83756.1	6.01E-94	heat stress transcription factor A-4a-like protein [Caragana korshinskii]
Swissprot	tr\|Q9FK72\|HFA4C_ARATH	3.00E-68	Heat stress transcription factor A-4c
trEMBL	tr\|R9R6C4\|R9R6C4_9FABA	2.00E-94	Heat stress transcription factor A-4a-like protein {ECO:0000313\|EMBL:AGJ83756.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00033	151280	160376	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

"

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000033s00008608.1	PF00447.12	HSF_DNA-bind	1	85	3.90E-26

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.143
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.077
SRR1811619	moderate drought stress	0.066

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.073
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.151
DRR006524	Root Summer glycyrrhizin low producing strain	0.102
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.009
SRR2868004	Drought Stress (root)	0.011
SRR2967015	Control (root)	0.042

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.118
SRR9715740	Leaf	0.083
SRR9715741	Leaf	0.071
SRR9715739	Root	0.000
SRR9715742	Root	0.026
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.076
SRR8749029	MeJA induced 9h	0.057
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.039

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.078
SRR8400027	Control - Root	0.091