Gene detail

Gene detail information of Glyur000033s00008607

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24190.1	0	Protein kinase superfamily protein
NR	KEH41204.1	0	ABC1/COQ8 Serine/Threonine kinase [Medicago truncatula]
COG	NP_489000.1	8.00E-148	hypothetical protein all4960 [Nostoc sp. PCC 7120]
Swissprot	tr\|Q9MA15\|Y1796_ARATH	2.00E-120	Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor)
trEMBL	tr\|A0A072VGN0\|A0A072VGN0_MEDTR	0	ABC1/COQ8 Serine/Threonine kinase {ECO:0000313\|EMBL:KEH41204.1}

Sequence

Transcript Sequence

>Glyur000033s00008607.1
AAAGGCCTTGAGCTTAGTGGCTGCAACGGTAGCACCGGTACACACTATCGCCCTTTCGCACCACAACCACAACTACTTTCTACTTCCACAGTTCGTAGTATAACAAAACCAACTACAACTCCCTCAGAAACCTCTCTCTCTCTCTCCGTAGAAGAGAAAGAGAAGAGAGACGATTCCGCCATGGACGCAGCAGCATCGCAGCTCGTCTACTGCAGAGTCGATCCCTTCCTTCGCTCTTCTCCTTCCCACCGCCACAACCTCCTCCCTCTCCGACGCCGCTCCAACCTCGTCTCAGCCGTCGCCGCCGAACCCAAACCACCTCCGCCGAAAACCGTCAACGGTTCTTCCTCGAAGTCTCCGCCTAGCAGAGCTGTCAACGGCGTCTCCTCGAGAATTGGTGATGTTTCGAAGGAGATTAAGAGAGTGAGGGCGCAAATGGAAGAGGACGAACAGTTGGCGTCGCTCATGAGAGGTCTTCGGGGGCAGAATCTGAGGGATTCGCTCTTTGCTGAGGATGATGTTCAGCTACGACTTGTTGAGGTGGTAGATGAAAGTAGTGAGTTTTTGCCATTGGTGTATGATCCTGCTAGCATTTCTGCATACTGGGGAAAACGTCCACGTGCCGTTGCAACACGCATCGTGCAGTTAATGTCTGTTGCTGGAGGTTTTCTTTCACGTATTGCCTGGGATGTGATTAACAAGAAGGTTAAGGAGAATGAAGTTGCTAGGGCCATTGAATTACGTGAAATTGTGACATCTTTGGGTCCAGCATACATCAAACTTGGGCAAGCATTGAGCATTCGCCCTGATATACTGTCTCCTGCAGCAATGACGGAGCTGCAGAAGCTCTGCGATAAAGTTCCTTCATTTCCAGATGATATGGCTATGGCTCTAATTGAGGAGGAGCTTGGTCAGCCATGGCAAAATATCTATTCTGAATTATCATCTTCTCCAATTGCTGCCGCATCTCTTGGACAGGTATATAAGGGCCGCCTAAAGGAAAATGGGGATTTGGTCGCTGTTAAAGTGCAAAGACCTTTTGTTCTTGAGACAGTCTCCATAGATGTGGTTGGGTTGGTTGATGAGTGGGCTGCTCGATTTTTTGAGGAGTTAGACTACGTGAATGAAGGTGAAAATGGAAACCGTTTTGCTGANATGATGAGGAAAGACCTACCACAGGTTGTCATACCAAGAACCTACAATAAATATACATCAAGGAGAGTTCTTACAACAGAATGGATTGACGGAGAGAAGCTGTCACAGAGCACTGAAAGTGATGTCGGAGATCTGGTTAATGTTGGAGTCATCTGCTATCTAAAACAGCTACTTGATACAGGGTTTTTTCATGCTGATCCACACCCGGGCAATATGATCCGCACTCCCGATGGAAAACTTGCCATACTTGACTTTGGGCTTGTTACAAAATTGACTGATGATCAGAAGTATGGAATGATTGAAGCAATTTCTCATCTCATCCATCGGGATTATCCAAACATAGTGAAAGACTTTGTTAAACTTGATTTCATTCCAGATGGAGTCAATTTGGAGCCTATCTTGCCAGTTCTTGCCAAGGTCTTTGACCAAGCTTTAGAAGGTGGAGGGGCAAAAAACATCAATTTTCAGGAGCTGGCATCAGATTTGGCTCAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTCTGGAAGGGATCGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGGCTCCTCACGGATGAATCCCCTCGGCTAAGGAATGCTCTACGTTACACTATATATGGGAAATCTGGAGTTTTTGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTCATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATATGAATGGGAATATGGCTGGTCTTGGGATTATTNCTAATCAGTCAGAATATCTCTTGCCAGGATTCCAGTCTGTTATGCCTCAGCCACTGCAGCCAGTGCAAACAAGGGCAGCTCTAGCATTTTTGCTGTCTGATAAGGGGAACTTTTTCCGAGAGTTTCTTTTGGACGAGATTGTTAAGGGCATTGATGCAATAACAAGGGAACAACTGGTNAGAATGATGTCCTTACTAGGAGTTCAGAATGCAACCCCTATTTTCAGTATGGTACCTACTGTCGGACCCTTTAAGCCCGCAGCTCTTATACCCACCATAACTGAAGAGGATCAAGTTATACTGAACAATGTCCAGAAAGTGGTGGAGTTTTTGACTGCAGGAAGTTCTCTATCAAGGACATCTGGTCAGGCACTCAATGTTCCTCAGATTATACAAGAACTTCTCCCAGTGTTGCCGGGCATCTCTGCTAAAGTGCTTCCTGAATGGCCAGAGATTCAAGGCAACCCCAGATCAACCTTTCTAAAGCCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00033	137241	159987	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000033s00008607.1	PF03109.11	ABC1	241	296	1.80E-16
Glyur000033s00008607.1	PF01636.18	APH	375	414	3.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.761
SRR1783600	control	34.858
SRR1783602	moderate drought stress	44.098
SRR1811619	moderate drought stress	43.981

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.827
DRR006520	Root Summer glycyrrhizin high producing strain	30.788
DRR006521	Root Winter glycyrrhizin high producing strain	39.616
DRR006522	Root Winter glycyrrhizin high producing strain	38.608
DRR006523	Root Summer glycyrrhizin low producing strain	41.954
DRR006524	Root Summer glycyrrhizin low producing strain	41.794
DRR006525	Leaf Summer glycyrrhizin high producing strain	176.948
DRR006526	Leaf Summer glycyrrhizin high producing strain	176.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.664
SRR2868004	Drought Stress (root)	53.569
SRR2967015	Control (root)	50.277

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	147.456
SRR9715740	Leaf	188.373
SRR9715741	Leaf	165.958
SRR9715739	Root	21.357
SRR9715742	Root	44.959
SRR9715743	Root	40.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.132
SRR8749028	MeJA induced 9h	32.664
SRR8749029	MeJA induced 9h	21.881
SRR8749030	Uninduced	20.005
SRR8749031	Uninduced	16.900
SRR8749032	Uninduced	22.991

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.607
SRR8400027	Control - Root	47.423