Gene detail information of Glyur000033s00008592 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02010.1 | 7.00E-145 | RHO guanyl-nucleotide exchange factor 7 |
| NR | XP_007133943.1 | 0 | hypothetical protein PHAVU_010G005400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LZN0|ROGF7_ARATH | 2.00E-179 | Rop guanine nucleotide exchange factor 7 |
| trEMBL | tr|V7AK06|V7AK06_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW05937.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00033 | 10126 | 15198 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000033s00008592.1 | PF03759.8 | PRONE | 112 | 393 | 3.50E-125 |
| Glyur000033s00008592.1 | PF03759.8 | PRONE | 395 | 432 | 5.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.312 |
| SRR1783600 | control | 0.327 |
| SRR1783602 | moderate drought stress | 0.122 |
| SRR1811619 | moderate drought stress | 0.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.678 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.684 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.059 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.058 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.416 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.524 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.587 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.430 |
| SRR2868004 | Drought Stress (root) | 1.086 |
| SRR2967015 | Control (root) | 1.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.258 |
| SRR9715740 | Leaf | 0.959 |
| SRR9715741 | Leaf | 2.604 |
| SRR9715739 | Root | 0.132 |
| SRR9715742 | Root | 1.790 |
| SRR9715743 | Root | 1.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.024 |
| SRR8400027 | Control - Root | 4.801 |