Gene detail

Gene detail information of Glyur000032s00003943.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01430.1	3.00E-54	homeobox-leucine zipper protein 17
NR	XP_006605480.1	7.32E-114	PREDICTED: homeobox-leucine zipper protein HOX3-like [Glycine max]
Swissprot	tr\|Q0JKX1\|HOX3_ORYSJ	2.00E-80	Homeobox-leucine zipper protein HOX3
trEMBL	tr\|I1ND77\|I1ND77_SOYBN	3.00E-114	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G01770.1}

Sequence

Transcript Sequence

>Glyur000032s00003943.1
ATCAGATCCTTCACTCCTCCTCCTCCTCCGATCCTGTCTTTTTTCTCCTTCTCCTTTTCAAGCGTGTCTCCTTCTGTTTCTTCACTTTACCTTTTACCTCTCTTTTGATCAAACATCTTCTTCTTTTCCATCCTCTTCATTCTTCTGCTCTTCTTCTATCTATGGCGTTTTTACCTACAAGTTCATCCAGCTTGGAATTGACCATGTCTGTCTCAGGCTTTGCTTCTGCACCCATCACTTTTCTTCCCTCATCACCTGTGAAAAAGTTGGACATAAACCGAGTACCCTTATTAGAAGAAGAATGGATGGCATCAAATATGGAAGAAGAAGAAGAAGAAGAAGAAAGCAGCAATGGAGACACTCCCCGCAAAAAGCTCCGTCTCACAAAGGAACAGTCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACTTTGAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAACTCAGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACCTAAAGAGGTGGTTTGGGTCTCTGACAGAGCAGAACCGGAGGCTGCAAAGGGAAGTGGAGGAACTGAGGGCTATGAAGGTGGGTCCCCCCACTGTCCTTTCCCCTCACACTTCCCAGCCCCTCCCTGCTTCCACCCTCACCATGTGTCCCCGCTGTGAGCGTGTCACCACCACCACCACCGCCACCTCTGTCCTCGACAAAGCAGCCGCCACCGCCGCCACTTTGTCTCCTAAAGTGCCGACGCCTACCCTCCAATCGCGCCCGTTATGAATTCAACAAACGGCAGTACTTCTTCTTCTACACTCGTGCACGGCACCTAGCTATATGAGACACATTTATTAATGCAAAAACAGAACAAAAACCTTCCTGGAAAAAAAAATTAAAAAAGGTGAAGGACGTACGTGAGAGAAATGTTTTATACTAGCTTGCTTCTACGAAAAGGATTTTTTGGTGAGAGGCGGAGGGAAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	503593	506746	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003943.1	PF00046.24	Homeobox	69	123	4.00E-17
Glyur000032s00003943.1	PF02183.13	HALZ	125	167	1.60E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.889
SRR1783600	control	10.884
SRR1783602	moderate drought stress	13.785
SRR1811619	moderate drought stress	13.685

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.413
DRR006520	Root Summer glycyrrhizin high producing strain	4.277
DRR006521	Root Winter glycyrrhizin high producing strain	19.397
DRR006522	Root Winter glycyrrhizin high producing strain	18.498
DRR006523	Root Summer glycyrrhizin low producing strain	7.565
DRR006524	Root Summer glycyrrhizin low producing strain	7.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.935
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.336

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.746
SRR2868004	Drought Stress (root)	6.084
SRR2967015	Control (root)	10.862

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.090
SRR9715740	Leaf	0.205
SRR9715741	Leaf	1.763
SRR9715739	Root	5.500
SRR9715742	Root	5.121
SRR9715743	Root	6.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.028
SRR8749028	MeJA induced 9h	5.278
SRR8749029	MeJA induced 9h	4.662
SRR8749030	Uninduced	7.857
SRR8749031	Uninduced	3.176
SRR8749032	Uninduced	5.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.996
SRR8400027	Control - Root	3.576