Gene detail information of Glyur000032s00003939 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01460.1 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_006583907.1 | 0 | PREDICTED: uncharacterized protein LOC100778905 isoform X2 [Glycine max] |
| COG | NP_900755.1 | 9.00E-13 | uridine kinase [Chromobacterium violaceum ATCC 12472] |
| Swissprot | tr|Q8VYB2|UKL3_ARATH | 2.00E-07 | Putative uracil phosphoribosyltransferase |
| trEMBL | tr|I1KM57|I1KM57_SOYBN | 0 | Uridine kinase {ECO:0000256|RuleBase:RU003825} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 468831 | 483172 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003939.1 | PF00485.13 | PRK | 108 | 224 | 2.00E-05 |
| Glyur000032s00003939.1 | PF00485.13 | PRK | 508 | 666 | 4.00E-12 |
| Glyur000032s00003939.2 | PF00485.13 | PRK | 91 | 207 | 2.00E-05 |
| Glyur000032s00003939.2 | PF00485.13 | PRK | 491 | 648 | 3.90E-12 |
| Glyur000032s00003939.3 | PF00485.13 | PRK | 108 | 224 | 2.00E-05 |
| Glyur000032s00003939.3 | PF00485.13 | PRK | 508 | 665 | 3.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.559 |
| SRR1783600 | control | 3.573 |
| SRR1783602 | moderate drought stress | 4.874 |
| SRR1811619 | moderate drought stress | 4.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.974 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.893 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.796 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.958 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.723 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.166 |
| SRR2868004 | Drought Stress (root) | 20.405 |
| SRR2967015 | Control (root) | 26.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.846 |
| SRR9715740 | Leaf | 7.644 |
| SRR9715741 | Leaf | 10.059 |
| SRR9715739 | Root | 0.775 |
| SRR9715742 | Root | 4.970 |
| SRR9715743 | Root | 3.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.205 |
| SRR8749028 | MeJA induced 9h | 13.995 |
| SRR8749029 | MeJA induced 9h | 7.611 |
| SRR8749030 | Uninduced | 13.802 |
| SRR8749031 | Uninduced | 13.195 |
| SRR8749032 | Uninduced | 6.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.008 |
| SRR8400027 | Control - Root | 13.102 |