Gene detail

Gene detail information of Glyur000032s00003935

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23090.1	0	sulfate transporter 91
NR	XP_004505277.1	0	PREDICTED: probable sulfate transporter 3.3-like isoform X2 [Cicer arietinum]
COG	YP_006180043.1	1.00E-60	sulfate transporter family protein [Halobacillus halophilus DSM 2266]
Swissprot	tr\|Q9SXS2\|SUT33_ARATH	0	Probable sulfate transporter 3.3
trEMBL	tr\|A0A072UM70\|A0A072UM70_MEDTR	0	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 {ECO:0000313\|EMBL:KEH30849.1}

Sequence

Transcript Sequence

>Glyur000032s00003935.1
ATGGACCCGAGTAGCAGCGGCACTGTGCATTCCGATAATGCCGTGGAAATAACCATGATGGAAGTGCACCAAGTTGTGCCACCACCCCACATGAGCACCGCACAGAGGGTCAAGACCAAGCTCAAGGAAACCTTTTTCCCTGATGATCCCCTGCGCCAATTCACGGGTCAACCATTCAACAGAAAACTAATCCTNGGAGCACAATACATGTTCCCCGTTCTTCAATGGCTTCCTAATTACAGCTTCAAACTCTTTAAATCTGACCTTGGAATCAGTTATGCTAAGCTTGCAAATCTTCCTCCAATTTTGGGACTCTATTCTAGTTTTGTTCCCCCACTAGTTTACGTTGCTCTTGGAAGCTCAAGGGATGTTGCAGTGGGACCCGTTTCTATTGCTTCTCTTGTGCTGGGATCCATGCTCACAGAGGAAGTATCNCCCTCAGCAGAGCCCGCTCTGTTTCTTCAGCTAGCTTTTACTTCAACATTCTTTGCCGGTCTCTTTCAAGCTGCTCTTGGAATTCTAAGGCTAGGATTTATCATTGATTTTTTGTCTAAGGCGATCCTTATTGGGTTCATGGCTGGAGCTGCTGTGATTGTCTCTCTGCAACAGCTCAAGAGCCTCCTTGGAATCACACATTTCACCAAACAGATGAGCCTTGTTCCTGTTATGAGTTCTATTTTTCACCATACTGACGAGAGTTTGAGGAAGCCAGAACTTTTCTGGGTCTCAGCTGGAGCTCCTCTTGCGTCTGTCATCTTCTCTACCATCCTGGTTTTTGCAATCAAGGGTCAACGTCATGGCATCAGCGTAATTGGGAAATTGCAACAAGGAATAAATCCTACTTCTGCGAATATGTTGCTTTTTCACGGCACTTATCTAGGTCTAGTCATAAAAACCGGGATCATCACTGGCATTTTATCCCTCATTGAAGGAATTGCAGTAGGGAGGACATTTGCAACTATCAGAAACTACAAAGTGGATGGAAATAAGGAAATGATAGCAATTGGGTTCATGAACGTGGTTGGCTCTACCACATCCTGTTATGTCACAACAGGATCTTTCTCTCGGTCAGCTGTCAATCATAACGCGGGTGCAAAAACAGCAATGTCAAACGTAGTAATGTCCGTGGCAGTCATGGTGACACTCCTGTTTCTTATGCCATTATTTCGATACACGCCTAATGTTGTGTTGGGTGCAATCATCATAACAGCAGCAGTTGGCCTCATTGATATCCCTGCTGCAATCCTCATTTGGAAGATAGACAAGTTTGATTTTGTTGTGTTGTTGACTGCATTCTTTGGTGTTATTTTTTTATCTGTCCAGCTTGGCCTTGCTCTTGCAGATATTGCGATGGATAGAAGAAGAAGGAGATACCACAACAGGAAACTTATGCCTTCAATATGTGATTCTGGAAATGTCAGGATCCAAATCTCAACCATGACTAATTGGAATGAGTTGTGGCAGTTTGTGTTGGTGAATCCTCTAGCCGAGGTCATTGACAAGCTGCAGAAAACAGATGAAGCCAATGAGTTCATTCAAGCATATTACCTTTTCCTGACAGTTGGAGAGGCTGTAACTTCCCTTTCATCAGCAATGAAGGGACAATCATCAACCATGGAAGAAGAGACACAGACAATTGTGACNGAGCACTAATCAGTTATTTAAGATAGCAGAAGAAAACAATAGAAGTTAAAAAGAAGCAGCAGCAGAACAGAATAGAGTTCATAGTTTAGAAAATTTGGTTCCACTAGGTATCTCCTTGTACAAATGAAATGTTCTGTATCATACGTGCCTCTGCCTCTTAGATTTTCCTCACAACTCACAACTCACAAGCAATCCTTGACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	453316	459608	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003935.1	PF13792.1	Sulfate_tra_GLY	71	140	3.90E-16
Glyur000032s00003935.1	PF00916.15	Sulfate_transp	171	427	6.20E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.285
SRR1783600	control	1.217
SRR1783602	moderate drought stress	1.963
SRR1811619	moderate drought stress	1.929

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.878
DRR006520	Root Summer glycyrrhizin high producing strain	1.390
DRR006521	Root Winter glycyrrhizin high producing strain	1.169
DRR006522	Root Winter glycyrrhizin high producing strain	1.219
DRR006523	Root Summer glycyrrhizin low producing strain	1.214
DRR006524	Root Summer glycyrrhizin low producing strain	1.436
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.067
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.970

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.815
SRR2868004	Drought Stress (root)	0.534
SRR2967015	Control (root)	1.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.748
SRR9715740	Leaf	1.496
SRR9715741	Leaf	0.790
SRR9715739	Root	0.249
SRR9715742	Root	0.451
SRR9715743	Root	0.522

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.565
SRR8749028	MeJA induced 9h	0.243
SRR8749029	MeJA induced 9h	0.474
SRR8749030	Uninduced	0.445
SRR8749031	Uninduced	0.086
SRR8749032	Uninduced	0.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.328
SRR8400027	Control - Root	2.806