Gene detail

Gene detail information of Glyur000032s00003931

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37410.2	1.00E-14	translocase inner membrane subunit 17-2
NR	XP_002514217.1	7.01E-18	mitochondrial import inner membrane translocase subunit tim17, putative [Ricinus communis]
Swissprot	tr\|Q9SP35\|TI172_ARATH	5.00E-18	Mitochondrial import inner membrane translocase subunit TIM17-2
trEMBL	tr\|B9RKH3\|B9RKH3_RICCO	3.00E-18	Mitochondrial import inner membrane translocase subunit tim17, putative {ECO:0000313\|EMBL:EEF48171.1}

Sequence

Transcript Sequence

>Glyur000032s00003931.1
TTTAATTTGAGAAAGGGAAAAGCGAAAAAGGAGGAGCACATAATAAATTGAGAAATCGAAAGCCCTAGAGGAAGAAGGAAGGAAGGAAGGAAGAGAGAGAGGCGAGAAGTAACGATGGGAACACCAGAGACATCAAGGGAACCCTGCCCCGATCGGATCCTAGACGACATAGGTGGTGCCTTCGGTATGGGTGCGGTGGAGGTTCCGCCTTCCACTTCCTCAAGGGACTCTACAACTCCCCAAGGGTGCACGCCTCCTCGGTGCCTCCCAGGCCGTCCGTCTCAACGCCCCCGCGTCGGCGGAAGCTTCGCCGTCTGGGTGGACTCTTCTCCACCTTCGACTGCACCATGGTCTACCTCCGCCAGAAGGAAGACCCTGGAACTCCATCTTCGCCGTGCCGCCACCGGTGGATTCCTCTCCATGCGCCAGGGCCTCGCCAACTCCGCGCCGCTCCGCCGCGTTCGGCGGCGTCCTACTGGCTCTCATCGAGGGAGCTGGGATCAATGCTCAACAAGTTCCTCAGCGCCCAGCAGCAGATGCCCATCATCATGGATGAGCCACTCCCCGGCGGGTTCCGGTCCAACGGGTTGCCAGGTCAACCCGCTCCACCTCCCGAGGATTCCAAATCGTGGCTCGGCGGGTGGTTCGGCGAAGGGAAGAAGAAAGAGGAACCCGCAACCGCTGGAGGAAGCGAGACCAAGATTCTGGAGAGTTTTGATGCCCCGCCTGTGCCCAATTTCGAGTACAAGTGAATTTGGTTTTGATATATGTGGTGGTCTTCTTTGGTTCGATTTTGAAAGATTACAATTTGGTAGTCAAGCTTGGTTTTCTGTTTTGATTCAACTTGCAAGCTGTGTGAATATTGGCTTTGGGTTAGAAGTTAGGATTGCATGCTTGAATGGTGGAAGTCCCTCCCTGNTTAATCTTATAGGCAACAGTGAGGGGGAGAACAAGAGTAAGAAATCTTCGAGAGTCGGGTTATGATGCTTCTTTTATNGAGAGGGAAGTGCGAAGGGGAATTGTTTGGTTGATAATGCTTCCCCAAATCTAGTATTGGTAGGATTATTCTATGTTATATTTGTAGCATGCCTTTTAGGCGTTTATGCAACATATATTGTATTTAGCGCAGAGTTATATGATGGAATTTTCATCATGGATTTTGATTATGTAGCTTTCAGTTAGTTTGTAGTAGTTCCTTTATTCTTCTACCTGATAAATTTATCAAGAAGTAAATTACACCGACTCCCCCTCAAGTTTGTTTAAAGACTGGGCGCCAAAGTTGTTCCTAAAAATACATTTAACCGTAGTTGACCCTTTGTAGGGTTAGCAGAACCTTCAGGCATCAGCTGAGGATGTTGTTCTCTTCACTTATTCAAGACATGAATGTCAATGAGTCCTTTAAGTTCGACTTTGAACAACAAACCCTATTCAATTTTAGGTACCACAACCACAAGATCTGTTCTCTTTTCCACAACCAGCGAGATACTATCTCNGGCAGACAATTGCCTTGCCCTTTCAAGAACAAGACGCCTGGCGAAATGGTTAAGCAATAAAACTGCATTCAGAACAGAGTGTGCCCATTACAGAGTCTGGTAGCTATGGTGGTTAAATCGGTNGATGAATTGGCGGGAAAGCAGGTGAAGGGTACAGTGTTGAACAATGGGTAGAATACGGTGGGCTAGGAGGTATTGTTTTCAACCTTGGAAGAAGAATTGAAGTTTTTCATTTAACACACTTGACTATCAATACATGCGACCGGAGGTTGATGAATTTGTCTAAAAACGTGGCAGGAAACATCGTGCCATGATGGGGTTGATATTGCTCTTGATGTTATTGGCTTAAGGAGAACAGTTAACAACGTACTCTCATTAAACACTTTTTGAGTATCATTTTACAGTGGGTCAGTGCCTCAGTGGGATATCCTGATACTGATTACTGAATGAGCTATATTTAATGGTAGATTATAAACACCACTAATATAACTTGCGTCTTATACCTTAAAAATTCTTGCCGACGAAATTAAATTAAAAGTTTGACAAGTGTTCACCAATAGCTGCTACTACATCGGCCTCCAAATGTCTACGATTTTCTTTTCGAACTCACGTTCCTCAATAAACAGAACCAGTGGTCACTGGTTCCACTCACATTTGCCTTGGATACTGCAACTGAATTNTTACATCTATTCTCCGTTGCCGCAGTTTCCTATGTTAAGAGATGCATTTTTAGCGCTAGTCAAGCTCAATGACATATTCAACTGGCGAAGGCAAAATACACAACAATTTTCATTTCGCCCTTGTCTTACTAACAAGAATAAGACGAACAAGATATAAAAGAAAACGTCGCAGCATTACTAACATGAAAAATAGAATTAGAATAACAAAGGTTAGCATCATCAAAGCATGAAATACTAGACGCGCAGCATAGAAAGAAACACTCTTTCATTGCCATTTTTCAGAATACAAAAGAGGCATAAGTTGCTAATCAAGTGTTTGTAACAAATTGCATTGCATTGGACACTAAATTTAAGTTATTTTTCACTCAATCAGAATTTGCATTTTCCAAGCCAACAACACAGACTTGACGACATCAATCACGAAGAATGCCCAAAATGTCCTCATCCCTAAACAAATGGAATCTGCAAAACAAATAAAAAAGATCCCAATTTGAGTAAAAAGGATAATTCAATCCAACAAATAAACACACACATCCGAAGAATAGGAACAGGATTCCGATANCATACTCTTTGTCATCGAGCTTAATTTGGGTGCCACCGTACTCGGGCAAGAGCACGTGGTCACCTTCCTTGACGGCCACCGGGATCAAATTCCCTGCTCTGTCTCGCGATCCAGGCCCAACTGCTACCACCTTTCCCGAATTGAGCTGTTTCGAATCGAAACCAGAAGCGGTTAAACCACCGAATCAAAATCGATTAGAAAAGACAAAAGATGGAGAGAGTGAGTTGGTTGAAACCTGGGAGGATTTCTCGGGGAGAAGAATGCCGGCGGAGGTCTTGGAGGGAGGGACAATTTTCTCAACGAGGATGCGGTTGAAGCTGGGAATCAAGCGCTTTGCCATCTCCGTCTCTCAGTGATGCTGCTGCTGCTGCTGCTGCTAGGGTTTTTCTGCAAATAAGGATGTGCTAACTGGGGTTGAGCGAGAGTGGCGTTTTTGAAGACGTCAGAAGCAGCGTTTTCTGGAGGAGAATGGAAGGTTCTAGGGACTTAGGTCGGAAGCAGGGTTTTTAGGGTTTTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	428131	431932	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

cellular_component
GO:0005744 mitochondrial inner membrane presequence translocase complex

molecular_function
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.803
SRR1783600	control	63.868
SRR1783602	moderate drought stress	84.766
SRR1811619	moderate drought stress	83.487

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.912
DRR006520	Root Summer glycyrrhizin high producing strain	53.075
DRR006521	Root Winter glycyrrhizin high producing strain	50.739
DRR006522	Root Winter glycyrrhizin high producing strain	48.637
DRR006523	Root Summer glycyrrhizin low producing strain	46.693
DRR006524	Root Summer glycyrrhizin low producing strain	46.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.976
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.211

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.871
SRR2868004	Drought Stress (root)	20.825
SRR2967015	Control (root)	18.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.445
SRR9715740	Leaf	20.040
SRR9715741	Leaf	16.325
SRR9715739	Root	35.520
SRR9715742	Root	34.015
SRR9715743	Root	27.909

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.275
SRR8749028	MeJA induced 9h	12.338
SRR8749029	MeJA induced 9h	15.407
SRR8749030	Uninduced	3.298
SRR8749031	Uninduced	2.436
SRR8749032	Uninduced	11.898

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.442
SRR8400027	Control - Root	22.351