Gene detail

Gene detail information of Glyur000032s00003926

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70820.1	0	phosphoglucomutase, putative / glucose phosphomutase, putative
NR	XP_003556140.1	0	PREDICTED: uncharacterized protein LOC100810397 [Glycine max]
COG	YP_003899599.1	2.00E-129	phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [Cyanothece sp. PCC 7822]
trEMBL	tr\|I1NDA5\|I1NDA5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G02220.1}

Sequence

Transcript Sequence

>Glyur000032s00003926.1
ATGGCTGCTTCTACTTCTCATAACTTCTCAACATCTTTGCACAGAGACACCCAGAAAACAAACTATACTTCTTCACCAGGAAGGATATCTTTGCACACCAAATTTGGTTTCTCATTTTCTGTGCCATTCAATAAATTATCTGTAAGTGCGAAAACCTGTGGCACTGCAAAGTATGATGAGGTGGTGGTGGATGAAGAATTGGACAAGATTAGGAGGCTTCAGAATGGTTCAGATGTTAGAGGAGTGGCATTGGAAGGTGAGAAAGGAAGAACCGTTGACCTTACTCCACCTGCAGTGGAGGCAATATCAGAGAGTTTTGGGGAGTGGGTTATCAATGGTTTAGAGAAGGAAAAGGGATACCCTGTGGAGAATGTGAGGGTGTCCCTTGGTCGTGACCCTCGAGTTTCAGGGCCAAAATTGAGTGTGGCAGTCTTTGCAGGTCTTGCTCGTGCTGGTTGCATGATGACAGCGTCTCATTTGCCTTACACCCGTAATGGTCTGAAATTTTTTACAAAGAGAGGGGGATTGACTTCGCCAGAGGTAGAGGAAATATGTGACAAAGCTGCTCGTAAATATGCAAATAGGCTGGCCAAGGTGTCTACCATGCTTAAGGTTCTTCCAACAAGAGTTGATTTCATGAGCACTTATTCAAAGCACCTACGAGAAATCATCAAGGAGAGAATTGGTCATCCTTTGCATTATGACACCCCACTCGAGGGATTCCAGATAATAGTTAATGCTGGGAACGGCTCAGGAGGATTCTTCACATGGGATGTGTTAGACAAGCTTGGTGCAGATACCTTTGGCTCTCTGCATCTTAACCCTGATGGGATGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACTGCCATGGCACTGACCAGAGCAGCAGTGTTAGAAAACTCGGCTGATCTTGGAATAGTTTTCGATACGGATGTGGACAGAAGTGGCGTGGTCGANAACAAAGGGAACCCGATAAATGGTGACAAACTGATTGCTCTCATGTCTGCCATTGTGTTGAGGGAACATCCAGGATCAACTATAGTGACTGATGCTCGTACAAGCATGGCACTCACTAGATTTATAACTGATAAAGGTGGTCAACATTGCCTATATCGCGTTGGTTACCGGAATGTCATTGACAAGGGAGTTCAGCTTAACCAGGATGGAATTGAAACACATCTTATGATGGAAACATCTGGTCATGGTGCTCTCAAAGAAAATCATTTCCTTGATGATGGGGCCTACATGGTGGTGAAAATTATAATTGAAATGGTACGAATGAAGCTTGCGGGATCAGATGAAGGGATTGGCAGTCTTATAAAAGATCTTGAAGAGCCGTGTGAATCAGTAGAACTAAGGATAAATATCATATCTGAACCTCGGCATGCTAAAGCAAAAGGATCAGAGGCCATTGAAACATTTCGAAACTACATTGAGGAAGGGAGGCTTAAGGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGAGTGAAGGTTGCCTTGTTGATACAAATGACACACCAGCTCCCGTTGATGCTAACATGTACAGGGCAAAAGTATCAACTGATGAGCATGGAGAACATGGTTGGGTACACATGAGACAGAGTATTCACAACCCAAACATTGCTGTGAACCTGCAATCTTCTGTTCATGGAGGCTGCTTGTCTATGGCAAGAGCTTTCAGAGATGATTTTCTCAAAGCAAGTGGGGTTGATACATTCCTNGACATTGCTCAAGTNGATAAGTTTGTTGAAAATGGCACAGTAGCCTAATTTGCAATTATTTGGGAGTCTGGGGTGGTNGTCTTGAACATGGATCAGACTTTTNTAGCATTTCAATGTGATCTACAATGAATTATTGTAGCATAAAAAGAAACTACACAGCTGCAGTTGAGTACATATTACAGATAATTCTTCTTTGAAAGTATATAAATAAGTATAATTGGTGTTATATAAGAACAGCAACATTAGAATCAGAATGATTGATTCCCTGTTATCAGCTTCTGTATAGTACATACTATATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	380789	383951	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016868 intramolecular transferase activity, phosphotransferases

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003926.1	PF02878.11	PGM_PMM_I	72	153	8.00E-08
Glyur000032s00003926.1	PF02878.11	PGM_PMM_I	150	192	1.70E-08
Glyur000032s00003926.1	PF02879.11	PGM_PMM_II	238	324	2.90E-18
Glyur000032s00003926.1	PF02880.11	PGM_PMM_III	328	427	7.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.024
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.026
SRR1811619	moderate drought stress	0.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.106
DRR006520	Root Summer glycyrrhizin high producing strain	0.105
DRR006521	Root Winter glycyrrhizin high producing strain	0.095
DRR006522	Root Winter glycyrrhizin high producing strain	0.144
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	91.142
DRR006526	Leaf Summer glycyrrhizin high producing strain	90.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.063
SRR2868004	Drought Stress (root)	0.024
SRR2967015	Control (root)	0.047

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.258
SRR9715740	Leaf	27.377
SRR9715741	Leaf	8.356
SRR9715739	Root	0.024
SRR9715742	Root	0.024
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.094
SRR8749031	Uninduced	0.182
SRR8749032	Uninduced	0.255

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.055
SRR8400027	Control - Root	0.042