Gene detail information of Glyur000032s00003919 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30070.1 | 9.00E-78 | SGS domain-containing protein |
| NR | XP_004505294.1 | 1.51E-134 | PREDICTED: calcyclin-binding protein-like [Cicer arietinum] |
| trEMBL | tr|C6T3P3|C6T3P3_SOYBN | 7.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G02270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 349791 | 352195 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003919.1 | PF09032.6 | Siah-Interact_N | 3 | 49 | 5.70E-05 |
| Glyur000032s00003919.1 | PF04969.11 | CS | 73 | 149 | 1.90E-14 |
| Glyur000032s00003919.1 | PF05002.10 | SGS | 153 | 206 | 1.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.152 |
| SRR1783600 | control | 63.509 |
| SRR1783602 | moderate drought stress | 105.413 |
| SRR1811619 | moderate drought stress | 104.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 125.583 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 124.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 146.846 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 142.976 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 155.959 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 155.595 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.542 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 89.703 |
| SRR2868004 | Drought Stress (root) | 69.519 |
| SRR2967015 | Control (root) | 52.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.882 |
| SRR9715740 | Leaf | 55.112 |
| SRR9715741 | Leaf | 50.327 |
| SRR9715739 | Root | 26.224 |
| SRR9715742 | Root | 38.263 |
| SRR9715743 | Root | 34.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 112.330 |
| SRR8749028 | MeJA induced 9h | 37.207 |
| SRR8749029 | MeJA induced 9h | 78.549 |
| SRR8749030 | Uninduced | 7.485 |
| SRR8749031 | Uninduced | 2.771 |
| SRR8749032 | Uninduced | 5.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 87.453 |
| SRR8400027 | Control - Root | 85.644 |