Gene detail

Gene detail information of Glyur000032s00003913

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31160.1	1.00E-53	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2
NR	XP_003607898.1	3.85E-112	14 kDa zinc-binding protein [Medicago truncatula]
COG	YP_007068252.1	2.00E-42	histidine triad (HIT) protein [Calothrix sp. PCC 7507]
Swissprot	tr\|P42856\|ZB14_MAIZE	3.00E-63	14 kDa zinc-binding protein
trEMBL	tr\|Q2MGQ9\|Q2MGQ9_MEDTR	1.00E-112	Uncharacterized protein {ECO:0000313\|EMBL:AFK47061.1}

Sequence

Transcript Sequence

>Glyur000032s00003913.1
CAATTTCAACGGCCAAGATTCTTCTTTTACAAGCTATTCGGAACTGAATTTCGCTCTACAAATGGGGTGAAACATTTTCCCGAGAAAATTAATTAAAATCTCAATTTACAACCTCACTCGCTTCTCCGAACCATGGCAGCGACGGTTCCTTTCTCTCTTCTTAGGAACTACTCGCAGTTGTTGTCCGCAAGAGCTTTCGTTGCAAAACCGAACAACTTCAATTTCTCCTCCAAGTTTGTTCTTCCTATTCAATGTCGCAGATTGCCTTTTAGTATCAGTGCCTCAAATAATGAACAAGCTGCAGCCAAAGCAGCTGCTGTCAATGCTGATAGTGGAGCTCCAACAATATTTGACAAGATCATAAATAAGGAAATCCCTTCAAGCATTGTATATGAAGATGACAAGGTCCTAGCATTTCGGGACATCAGTCCACAGGCTCCAGTTCATGTTCTGGTCATTCCAAAATTCAGAGATGGGTTAACAGAACTTGGGAAGGCTGATGCTAGACATGGGGAGATATTAGGTCAACTTCTCTATGCAGCCAAAATAGTAGCTGAGAAAGAAGGTATCGTTGATGGATTTCGTGTGGTCATCAACAGTGGTGCCAGTGCCTGTCAAAGTGTGTATCATCTGCACTTGCATGTCCTAGGTGGGAGACAGATGAATTGGCCACCTGGTTGAAGGTTGAAAGTTAGTTAATCCTTGTTGATTCCTGTGGAGCTTAGAAAATAATTGGATGGGAAAGGTGCAAAATGCTTTTTATTGTTGTGAAACCTAAACTTGNCCTTTAAAATTAGTACTGCGTTTGTGGGTTTATGGTACTATATAATTATAAATAAGCAACCCTGCTGATGCTTATCTTGAACTACGTTAATTTTGTACCGACCCCATTGAATNTCTGGAGTCCCGGATGCCTCTTTTCTTTTGCATTTTTAATATCCTATGGTATAATTCACGTAGCACCACCNCCACACTTGAACATTGTTCCAACACTACTGCTATCCTAGACACGCTTTATGTACCAAGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	325040	327512	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003913.1	PF01230.18	HIT	79	176	5.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.322
SRR1783600	control	22.505
SRR1783602	moderate drought stress	18.367
SRR1811619	moderate drought stress	18.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.232
DRR006520	Root Summer glycyrrhizin high producing strain	33.448
DRR006521	Root Winter glycyrrhizin high producing strain	2.526
DRR006522	Root Winter glycyrrhizin high producing strain	2.634
DRR006523	Root Summer glycyrrhizin low producing strain	34.498
DRR006524	Root Summer glycyrrhizin low producing strain	34.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.921

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.928
SRR2868004	Drought Stress (root)	27.049
SRR2967015	Control (root)	21.786

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.901
SRR9715740	Leaf	91.601
SRR9715741	Leaf	81.409
SRR9715739	Root	17.608
SRR9715742	Root	22.491
SRR9715743	Root	20.386

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.162
SRR8749028	MeJA induced 9h	8.061
SRR8749029	MeJA induced 9h	18.499
SRR8749030	Uninduced	13.100
SRR8749031	Uninduced	9.116
SRR8749032	Uninduced	15.239

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.938
SRR8400027	Control - Root	61.584