Gene detail

Gene detail information of Glyur000032s00003911

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G35110.2	transcription activators
NR	XP_007157772.1	hypothetical protein PHAVU_002G097500g [Phaseolus vulgaris]
Swissprot	tr\|Q5S2C4\|NCKP1_ARATH	Protein NAP1
trEMBL	tr\|V7CLK3\|V7CLK3_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW29766.1}

Sequence

Transcript Sequence

>Glyur000032s00003911.1
CAATAATATGATATCTGCGCTGAAAATTGCAGCTCCCTCCCGCACTTGCTTTCACTGCTCTCATTTCTTNATCATTCATATTCATCTTCGTTCATTCATTCCAATATTAAGCACCCACTCCACTCTCTCAGATCTGACACTCTCTGATTCAACTCTTCTCTCTCTCTACTGTCACCACGGATTATTAGTTCATGGCTAGGTCAAGGCAAAGACTATCAAACCAGGATTCTTCGCTGTCACCTACTGCTGCAAGATCAAGGGAGTGGGATGGCCCTTCTAGATGGGCAGACTACCTTGGAACAGATATAAATTCTCCGCTATCTTCAAGTAGCTCCAGGAATTTCAATCACGATGGGCAGTCTCAGGGAAGTACGCCATCCCAAACCCACAAGGGTCTTAACATGCAGTGGGTTGTCCAGCTCACTGATGTTGCCGAAGGTCTTATGGCTAAGATGTATAGGTTAAATCAACTTTTGGATTATCCGGATCCCATCAATCATGTATTTTCGGAAGGATTTTGGAAAGCTGGTGTATTCCCCAATCACCCTAGAATCTGTGTTTTGCTCTCTAAGAAATTTCCAGAACACTTCAGCAAGTTGCAACTTGAACGTCCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTCTTCTGCTCATTTGTGCGGATGCCAAGAAAGATGTTGCTACAGACCTATAACCTTCTACATGCAATGTCAAGAAATGAGAGGGATTGTGATTTCTATCATCGCTTGGTTCAGTTCATCGACTCTTATGATCCACCACTAAAAGGCTTACAGGAAGACCTCAATTTTGTGAGCCCTCGTATTGGAGAGGTATTGGAGGCGGTAGGCCCNATTATATTTCTATCAACAGACACAAGGAAACTTAGAAACGAGGGATTTTTAAGTCCATATCATCCTCGGTATCCGGACATACTCACAAATTCTGCTCATCCGCTGAGAGCACAAGATCTAGCAAATGTAACTGCATATCGAGAATGGGTGTTATTTGGGTATCTTGTCTGCCCTGATGAGCTGCGTCGTGTCACTAGCATTGATATTGCTTTGGTTGTATTGAAGGAGAATTTAGTCCTCACATTATTCAGAGATGAGTACATACTTTTGCATGAGGATTATCAGTTGTACGTTCTACCCCGAATATTAGAATCTAAGAAGATGGCAAAATCTGGGCGCTCGAAGCAAAAAGAGGCAGATTTGGAGTATAATGTTGCCAAGCAGGTTGAGAAAATGATAAGTGAAGTGCATGAGCAAGCAATATTATCTTGTGATGCCATACATCGTGAAAGGAGAATTTTACTGAAACAAGAAATTGGGAGAATGGTGCTATTTTTTACTGATCAGCCCAGTCTACTGGCCCCCAACATTCAGATGGTGTTTTCTGCCTTGGCTTTAGCACAATGTGAAGTGATCTGGTATTTCCAACATGTAGGAGTTGCATCATCAAAATCTAAAACTGCTCGTGTGGTTCCAGTAGACATAGATCCAAATGACCCAACCATTGGATTTCTATTAGATGGAATGGACCATTTATGTTGCTTGGTGCGCAAATACATTGCAGCAATTCGAGGCTATTCATTGTCTTATCTTTCATCCTGTGCTGGAAGAATTCGGTTTTTATTGGGAACCCCGGGAATGGTGGCTCTTGATATAGATGCTAGCTTGAAAGGAATTTTTCAGCAGATTGTCCACCACCTTGAAAACTTGCCAAAGCCACAGGGTGAAAATATATCTGCTATNACTTGTGATCTGTCGGATTTTCGAAAGGATTGGCTGTCAATTTTATTGATAGTCACGTCTTCACGTTCATCTATAAACATTAGGCACTTGGAGAAAGCTACAGTTTCCACTGGCAAAGAAGGCTTACTATCAGAGGGGAATGCTGCTTACAATTGGTCCAGATGTGTAGATGAATTGGAATCCCTACTTTCAAAGCATGGTAGTCTTAGGAAGCTGTATTTTTACCACCAGCACCTCACAGCTGTTTTTAGAAACACCATGTTTGGTCCAGAAGGGCGTCCTCAACATTGTTGTGCGTGGCTTGGGATTGCTAGTAGTTTTCCAGAGTGTGCATCTCCGATTGTTCCGGAAGAGGTTACAAAAATTGGCAGGGATGCTGTTCTCTATGTTGAATCTCTAATTGAATCCATCATGGGAGGATTGGAAGGATTGATAAATATTCTTGACTCTGAAGGAGGATTTGGTGCCCTAGAGAATCAGTACATGAGAGAATGCATTCTTGGCAATTTCAGAAGAAGATTGCTTGGTGTTCTGAAAACTGATAATGATCTTCAACGGCCTTCTGTTCTGGAATCACTGATTCGGAGNCATATTAGCATTGTGCATCTTGCAGAGCAGCACATCAGCATGGACATTACTCAGGGTATTCGTGAAGTTTTGCTTTCAGAAGCCTTTTCTGGACCAGTTTCTTCTCTGCACTTGTTTGAGAAGCCAACGGACCAACATACAGGATCGGCCACTGAATCTGTATGCAATTGGTATATCGAAAACATAATCAAGGATGTATCGGGTGCTGGGATATTGTTTGTTCCAATTCATAAATGCTTCAGGAGTACAAGGCCTGTTGGTGGATATTTTGCAGAATCGGTGACTGATCTAAGAGAACTGAAGGCTTTTGTACGTATTTTTGGTGGCTATGGAGTAGACAGGCTAGACAGAATGCTTAAAGAACACACTGCAGCACTTTTAAATTGCATTGACANCTCATTGCGATCAAATCGTGATGTGCTAGAAGCTGTTGCTACCAGTCTGCATGCTGGTGATAGAATTGAAAGAGAAGCTTCTATGAAGCAAATAGTTGATCTGGAAACTGTGATTGGTTTTTGTGTTCAGGCAGGCCTAGCCCTGGCTTTTGGTCGGCTACTAGCTGAGGCTTCTGGTGCCATACTTGAAGAAGGCGCTCCCTTGATACATTCGCTGCTAGCTGGGGTGGTTAAGCATCTACCTGATGGAGTACCAGAAAAGGAAGAGATCAAGAGAATGAGAACAGTGGCAAATACTGTAGGTGTTGTGAGTGATCATGATTCAATTTGGGTAAGATCAATTTTAGAGGAAGTTGGCGGTGCAAGTGATGGTTCATGGAGCTTGTTACCATACTTATTTGCCACATTCATGACATCTAATATTTGGTTCACCACGGCATTTAATGTTGACACGGAGGGTTTTAGTAACAATATCCATTGCTTGGCAAGGTGCATTTCTGCAGTGATTGCCGGAAGTGAGTTTGTTAGATTGGAACGTGAACATCAGCATCGACAATCTTTAACAAATGGGCATGCCAGCGAGGGAATGGATCCTGAATTATCAAGTCNTATGTCAGCTGAAGCAAGTATCAAGTCCACGCTGCAGTTATTTGTGAAACTCTCTGCAGAGATCATACTGGATTCTTGGAGTGAAACACATAGGTCTCATCTTGTAGCACAGCTTATCTTCCTAGACCAACTTTGTGAGATTTCACCATACCTTCCGCGAAGCTCACTGGAAACCCATGTTCCTTACGCCATTCTCCGTTCAGTATACAGTCAATACTATGCAGATACTCCATCNACTCCATTGGCGATACTGAACGCATCACCCCGTCATTCACCTGCTATATTGCTAGCACATGCTTCTCCTGTCATGAGGCATCCTCGTGGGGACTCCACACCACCGTATTATGGCAATGATTCAGGATACTTCAAAGCATCATCGTCACATAGCCAGGAACACCTCTACGATGCTGACATTAGCAGCTTAAGGAACACACGTCGTTCTGGTCCTTTGGATTACAGTGCAAGCCGTAATAATAGGGTTAAATCTGTTGAAGGCTCAACTTCTGGGAGTACTGGACCCAGTCCCCTTCCTAGATTTGCAGTATCTAGATCTGGTCCATTAGCATACAAGTAGTAAGTTGTTTAAAATACCCAACAGGAGCTGGTAAATTATTCACCTCTTGCTAGTGATCAGTTGTCCATAACCATAAATCATCCAGCAGGTTCCCACAAATTTAGGCAAAATGTACATCACACTGAAGCATCCTTTTTGTAGTCGTCTGGATAGTTTAAATCAGTGCCATATATCAAGTCCCTGCTGTTCTAGATAGAGTCTTAGAGAACCAAGTTTGCATGCTTTTTTGCTTTGCNCATTTACCTAAGTCGTGACATCTTGCTTTCTCTAAGTCTGTTAGTAGAGTCATTCTGGATCTT

Protein Sequence

>Glyur000032s00003911.1
MARSRQRLSNQDSSLSPTAARSREWDGPSRWADYLGTDINSPLSSSSSRNFNHDGQSQGSTPSQTHKGLNMQWVVQLTDVAEGLMAKMYRLNQLLDYPDPINHVFSEGFWKAGVFPNHPRICVLLSKKFPEHFSKLQLERPHQNSLILHAFMDLFCSFVRMPRKMLLQTYNLLHAMSRNERDCDFYHRLVQFIDSYDPPLKGLQEDLNFVSPRIGEVLEAVGPIIFLSTDTRKLRNEGFLSPYHPRYPDILTNSAHPLRAQDLANVTAYREWVLFGYLVCPDELRRVTSIDIALVVLKENLVLTLFRDEYILLHEDYQLYVLPRILESKKMAKSGRSKQKEADLEYNVAKQVEKMISEVHEQAILSCDAIHRERRILLKQEIGRMVLFFTDQPSLLAPNIQMVFSALALAQCEVIWYFQHVGVASSKSKTARVVPVDIDPNDPTIGFLLDGMDHLCCLVRKYIAAIRGYSLSYLSSCAGRIRFLLGTPGMVALDIDASLKGIFQQIVHHLENLPKPQGENISAXTCDLSDFRKDWLSILLIVTSSRSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESLLSKHGSLRKLYFYHQHLTAVFRNTMFGPEGRPQHCCAWLGIASSFPECASPIVPEEVTKIGRDAVLYVESLIESIMGGLEGLINILDSEGGFGALENQYMRECILGNFRRRLLGVLKTDNDLQRPSVLESLIRXHISIVHLAEQHISMDITQGIREVLLSEAFSGPVSSLHLFEKPTDQHTGSATESVCNWYIENIIKDVSGAGILFVPIHKCFRSTRPVGGYFAESVTDLRELKAFVRIFGGYGVDRLDRMLKEHTAALLNCIDXSLRSNRDVLEAVATSLHAGDRIEREASMKQIVDLETVIGFCVQAGLALAFGRLLAEASGAILEEGAPLIHSLLAGVVKHLPDGVPEKEEIKRMRTVANTVGVVSDHDSIWVRSILEEVGGASDGSWSLLPYLFATFMTSNIWFTTAFNVDTEGFSNNIHCLARCISAVIAGSEFVRLEREHQHRQSLTNGHASEGMDPELSSXMSAEASIKSTLQLFVKLSAEIILDSWSETHRSHLVAQLIFLDQLCEISPYLPRSSLETHVPYAILRSVYSQYYADTPSTPLAILNASPRHSPAILLAHASPVMRHPRGDSTPPYYGNDSGYFKASSSHSQEHLYDADISSLRNTRRSGPLDYSASRNNRVKSVEGSTSGSTGPSPLPRFAVSRSGPLAYK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	301623	318467	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003911.1	PF09735.4	Nckap1	141	684	1.80E-213
Glyur000032s00003911.1	PF09735.4	Nckap1	683	1130	3.20E-143

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.789
SRR1783600	control	25.402
SRR1783602	moderate drought stress	25.568
SRR1811619	moderate drought stress	25.346

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.385
DRR006520	Root Summer glycyrrhizin high producing strain	29.218
DRR006521	Root Winter glycyrrhizin high producing strain	16.007
DRR006522	Root Winter glycyrrhizin high producing strain	16.084
DRR006523	Root Summer glycyrrhizin low producing strain	29.872
DRR006524	Root Summer glycyrrhizin low producing strain	30.113
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.221
SRR2868004	Drought Stress (root)	35.551
SRR2967015	Control (root)	35.545

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.030
SRR9715740	Leaf	12.053
SRR9715741	Leaf	12.149
SRR9715739	Root	5.672
SRR9715742	Root	23.148
SRR9715743	Root	21.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.121
SRR8749028	MeJA induced 9h	13.314
SRR8749029	MeJA induced 9h	10.291
SRR8749030	Uninduced	6.216
SRR8749031	Uninduced	4.451
SRR8749032	Uninduced	5.724

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.104
SRR8400027	Control - Root	35.414