Gene detail information of Glyur000032s00003909 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21065.1 | 2.00E-71 | |
| NR | XP_004505303.1 | 3.39E-110 | PREDICTED: UPF0047 protein YjbQ-like [Cicer arietinum] |
| COG | YP_004167262.1 | 1.00E-55 | hypothetical protein Nitsa_0241 [Nitratifractor salsuginis DSM 16511] |
| trEMBL | tr|Q2MGQ1|Q2MGQ1_MEDTR | 1.00E-107 | Secondary thiamine-phosphate synthase enzyme {ECO:0000313|EMBL:AES90088.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 286855 | 288892 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003909.1 | PF01894.12 | UPF0047 | 53 | 174 | 4.80E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.890 |
| SRR1783600 | control | 35.065 |
| SRR1783602 | moderate drought stress | 43.046 |
| SRR1811619 | moderate drought stress | 43.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 85.116 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 83.529 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 105.702 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 103.307 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.904 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.979 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 174.997 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 173.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.177 |
| SRR2868004 | Drought Stress (root) | 65.578 |
| SRR2967015 | Control (root) | 64.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 161.794 |
| SRR9715740 | Leaf | 244.545 |
| SRR9715741 | Leaf | 165.834 |
| SRR9715739 | Root | 49.904 |
| SRR9715742 | Root | 49.194 |
| SRR9715743 | Root | 46.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.761 |
| SRR8749028 | MeJA induced 9h | 17.707 |
| SRR8749029 | MeJA induced 9h | 42.120 |
| SRR8749030 | Uninduced | 18.396 |
| SRR8749031 | Uninduced | 8.892 |
| SRR8749032 | Uninduced | 18.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 85.001 |
| SRR8400027 | Control - Root | 81.020 |