Gene detail information of Glyur000032s00003908 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35120.1 | 1.00E-61 | Single hybrid motif superfamily protein |
| NR | KHN08050.1 | 7.36E-85 | Glycine cleavage system H protein, mitochondrial [Glycine soja] |
| COG | YP_006347087.1 | 1.00E-45 | glycine cleavage system H protein [Mesotoga prima MesG1.Ag.4.2] |
| Swissprot | tr|O82179|GCSH2_ARATH | 3.00E-77 | Glycine cleavage system H protein 2, mitochondrial (Precursor) |
| trEMBL | tr|I1NDC6|I1NDC6_SOYBN | 3.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G02400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00032 | 283116 | 286170 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000032s00003908.1 | PF01597.14 | GCV_H | 95 | 212 | 1.70E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 82.812 |
| SRR1783600 | control | 83.297 |
| SRR1783602 | moderate drought stress | 47.265 |
| SRR1811619 | moderate drought stress | 46.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 90.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 89.992 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.267 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 226.853 |
| SRR2868004 | Drought Stress (root) | 140.545 |
| SRR2967015 | Control (root) | 125.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.065 |
| SRR9715740 | Leaf | 32.290 |
| SRR9715741 | Leaf | 37.605 |
| SRR9715739 | Root | 46.660 |
| SRR9715742 | Root | 77.193 |
| SRR9715743 | Root | 72.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 163.477 |
| SRR8749028 | MeJA induced 9h | 99.360 |
| SRR8749029 | MeJA induced 9h | 114.662 |
| SRR8749030 | Uninduced | 87.613 |
| SRR8749031 | Uninduced | 51.213 |
| SRR8749032 | Uninduced | 89.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 167.995 |
| SRR8400027 | Control - Root | 156.885 |