Gene detail

Gene detail information of Glyur000032s00003906

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49350.1	5.00E-100	pfkB-like carbohydrate kinase family protein
NR	XP_003607889.1	0	Sugar kinase, putative [Medicago truncatula]
COG	YP_007566284.1	6.00E-27	putative pseudouridine kinase [Ilumatobacter coccineus YM16-304]
trEMBL	tr\|Q2MGQ0\|Q2MGQ0_MEDTR	0	PfkB family carbohydrate kinase {ECO:0000313\|EMBL:AES90086.1}

Sequence

Transcript Sequence

>Glyur000032s00003906.1
ATGATACGGTCACGGAAGTTGGTGACTGTTGTTGAGTTAGTAGGCTGTCCCTGTACAGCTGTGCTGGCTGCTTTTTCTGGGGCATTACGTCACATTTATATCGCGCATCACGTTATGCTAAGAGGTAGGCAATTGGAGCATGGGGATGCAGAAGCAGTAATAATTGGGGGTATGGTGTTGGACATTCATGCCACACCTTCAATCCCTGCAAATCCAGGAACCACTACCCCTGGCAAGGTATATTATGTCCAAGGCGGCGTGGCAAGGAATGTAGCAGAGTGCATGTCAAAGCTAGGAGCAAAGCCATATATGATTAGTGCTCTCGGGTTTGACATGGCTGGNAACCTGCTGTTGGAACAGTGGAAATCTGCTGGCCTATCAACAGAAGGTATTTTGAAGAATAAAGATATTGAGACTCCAGTTGTATGCAATATATTTGATGTTAATGGCGAGGTAGCAGCTGGTGTTGCTAGTGTGGAGGCTCTTGAAAAATATCTGACACCTGACTGGATCTTACACTTCAAGAGAACTTTACTTTCTGCTCCAGTGTTAATGGTTGATGCAAATCTAAGTTGTCCTTCCCTTGAAGCTTCTTGTAAAATGGCAGCTGACACAGGTTGTCCTGTCTGGTTTGAACCAGTGTCTGTTACTAAATCGCGAAGAATCAGTTCTATTGTCAAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTAATGCGATGGCAAATNCTTTATCTGGCAGTGATGAATTCCGCCCACTTAAAGAAAACCACAACAAAAATAACCTTTCATCAGCATCTTTGTTTCAAATGCTGAAACCAGCAGTGTGGGTTTTGCTAGAANAAGGCATTAAAGTGGTCCTGGTGACCTTAGGCTCAAATGGAGTGTTTTTATGCAGTAAAGGAGGGCCAAGCTGCTTTAAAATTCCTCCGGGGAAAACAAATCGGCNTGGTTTTGGTGGACAATTATACAAGACTATTATGCAAAATTGTCCACCTAATCGTTATTCTGGTTTTTCAGAACATGATAGAAGCTCTCCTCTCTTTGCTGTGCATTTGCCTTCACTTCCTGCTTCAGTNGTAAGGCTTACCGGTGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGCGTGTGTGTTGGCATTGCAGTGGCTAAAGCTGCTGTTGAGGTTGAGGCTAATGTTCCGCCGGCTTTTAGTTTAGCTGCCATTGCAGATGATGCCAAGTCTGTATTCTGTCGTGCCAAAGTGCTCTTCCACCAATCAATGCTGTAAATTTTGAATGAGGATTGAAGTGACCAAAATTTTGGGAGGATTTAAAAAAAAAAAGAGCCGCCAAGGGTTATTTTTGGGAAAAGTGTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00032	271771	276133	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006014 D-ribose metabolic process

molecular_function

GO:0004747 ribokinase activity

GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000032s00003906.1	PF00294.19	PfkB	52	311	4.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.961
SRR1783600	control	10.674
SRR1783602	moderate drought stress	13.194
SRR1811619	moderate drought stress	13.259

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.938
DRR006520	Root Summer glycyrrhizin high producing strain	10.087
DRR006521	Root Winter glycyrrhizin high producing strain	5.097
DRR006522	Root Winter glycyrrhizin high producing strain	4.770
DRR006523	Root Summer glycyrrhizin low producing strain	11.499
DRR006524	Root Summer glycyrrhizin low producing strain	11.883
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.052
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.157

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.820
SRR2868004	Drought Stress (root)	27.220
SRR2967015	Control (root)	25.790

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.318
SRR9715740	Leaf	10.109
SRR9715741	Leaf	16.018
SRR9715739	Root	4.795
SRR9715742	Root	7.062
SRR9715743	Root	8.913

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.533
SRR8749028	MeJA induced 9h	22.391
SRR8749029	MeJA induced 9h	17.163
SRR8749030	Uninduced	28.990
SRR8749031	Uninduced	22.652
SRR8749032	Uninduced	21.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.663
SRR8400027	Control - Root	28.922